Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005565A_C01 KMC005565A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN05336.1| Putative leucine-rich repeat transmembrane protei... 177 2e-43
gb|AAK18840.1|AC082645_10 putative receptor kinase [Oryza sativa] 166 2e-40
ref|NP_180241.1| leucine-rich repeat transmembrane protein kinas... 146 2e-34
gb|AAK92807.1| putative receptor protein kinase [Arabidopsis tha... 146 2e-34
ref|NP_566589.1| leucine-rich repeat transmembrane protein kinas... 139 3e-32
>gb|AAN05336.1| Putative leucine-rich repeat transmembrane protein kinase [Oryza
sativa (japonica cultivar-group)]
Length = 675
Score = 177 bits (448), Expect = 2e-43
Identities = 86/107 (80%), Positives = 99/107 (92%)
Frame = -1
Query: 710 TDPRTVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSLVREEWTSEVFDLE 531
TD R VSQKADVYSFGVLLLELLTGKAPTHA++NEEG+DLPRWVQS+VREEWT+EVFD E
Sbjct: 552 TDIRRVSQKADVYSFGVLLLELLTGKAPTHAVVNEEGLDLPRWVQSVVREEWTAEVFDQE 611
Query: 530 LLRYQNVEEEMVQLLQLAVDCAAPYPDRRPSIAEVTRSIEELCRSNL 390
LLRYQNVEEEMVQLLQLA+DC+A +PDRRPS++EV I+E+ RS+L
Sbjct: 612 LLRYQNVEEEMVQLLQLAIDCSAQHPDRRPSMSEVAARIDEIRRSSL 658
>gb|AAK18840.1|AC082645_10 putative receptor kinase [Oryza sativa]
Length = 686
Score = 166 bits (421), Expect = 2e-40
Identities = 81/106 (76%), Positives = 92/106 (86%)
Frame = -1
Query: 710 TDPRTVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSLVREEWTSEVFDLE 531
TDPR VSQKADVYSFGVLLLELLTGKAP+ A LN+EGVDLPRWVQS+VR EWT+EVFD+E
Sbjct: 545 TDPRRVSQKADVYSFGVLLLELLTGKAPSQAALNDEGVDLPRWVQSVVRSEWTAEVFDME 604
Query: 530 LLRYQNVEEEMVQLLQLAVDCAAPYPDRRPSIAEVTRSIEELCRSN 393
LLRYQNVEE+MVQLLQLA+DC A PD RPS+ V IEE+ +S+
Sbjct: 605 LLRYQNVEEQMVQLLQLAIDCVAQVPDARPSMPHVVLRIEEIKKSS 650
>ref|NP_180241.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g26730.1, supported by cDNA: gi_15292872
[Arabidopsis thaliana] gi|25407845|pir||B84664 probable
receptor-like protein kinase [imported] - Arabidopsis
thaliana gi|2760839|gb|AAB95307.1| putative
receptor-like protein kinase [Arabidopsis thaliana]
Length = 658
Score = 146 bits (369), Expect = 2e-34
Identities = 70/109 (64%), Positives = 88/109 (80%)
Frame = -1
Query: 707 DPRTVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSLVREEWTSEVFDLEL 528
+ R V+ K+DVYSFGVLLLELLTGK+P A L EEG+DLPRWV S+VREEWT+EVFD+EL
Sbjct: 519 ETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVLSVVREEWTAEVFDVEL 578
Query: 527 LRYQNVEEEMVQLLQLAVDCAAPYPDRRPSIAEVTRSIEELCRSNLKED 381
+RY N+EEEMVQLLQ+A+ C + PD+RP + EV R IE++ RS +D
Sbjct: 579 MRYHNIEEEMVQLLQIAMACVSTVPDQRPVMQEVLRMIEDVNRSETTDD 627
>gb|AAK92807.1| putative receptor protein kinase [Arabidopsis thaliana]
Length = 658
Score = 146 bits (369), Expect = 2e-34
Identities = 70/109 (64%), Positives = 88/109 (80%)
Frame = -1
Query: 707 DPRTVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSLVREEWTSEVFDLEL 528
+ R V+ K+DVYSFGVLLLELLTGK+P A L EEG+DLPRWV S+VREEWT+EVFD+EL
Sbjct: 519 ETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVLSVVREEWTAEVFDVEL 578
Query: 527 LRYQNVEEEMVQLLQLAVDCAAPYPDRRPSIAEVTRSIEELCRSNLKED 381
+RY N+EEEMVQLLQ+A+ C + PD+RP + EV R IE++ RS +D
Sbjct: 579 MRYHNIEEEMVQLLQIAMACVSTVPDQRPVMQEVLRMIEDVNRSETTDD 627
>ref|NP_566589.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g17840.1, supported by cDNA: 22221., supported by
cDNA: gi_20465260 [Arabidopsis thaliana]
gi|9294488|dbj|BAB02707.1| probable receptor-like
protein kinase protein [Arabidopsis thaliana]
gi|20465261|gb|AAM19950.1| AT3g17840/MEB5_6 [Arabidopsis
thaliana] gi|25090409|gb|AAN72294.1| At3g17840/MEB5_6
[Arabidopsis thaliana]
Length = 647
Score = 139 bits (351), Expect = 3e-32
Identities = 67/108 (62%), Positives = 87/108 (80%), Gaps = 3/108 (2%)
Frame = -1
Query: 710 TDPRTVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSLVREEWTSEVFDLE 531
TDPR VSQKADVYSFGV+LLELLTGKAP+++++NEEG+DL RWV S+ REEW +EVFD E
Sbjct: 534 TDPRRVSQKADVYSFGVVLLELLTGKAPSNSVMNEEGMDLARWVHSVAREEWRNEVFDSE 593
Query: 530 LLRYQ---NVEEEMVQLLQLAVDCAAPYPDRRPSIAEVTRSIEELCRS 396
L+ + +VEEEM ++LQL +DC +PD+RP + EV R I+EL +S
Sbjct: 594 LMSIETVVSVEEEMAEMLQLGIDCTEQHPDKRPVMVEVVRRIQELRQS 641
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,606,659
Number of Sequences: 1393205
Number of extensions: 13573987
Number of successful extensions: 45829
Number of sequences better than 10.0: 2147
Number of HSP's better than 10.0 without gapping: 41853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44851
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
