Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005560A_C01 KMC005560A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84848 phospholipase D [imported] - Arabidopsis thaliana 179 3e-44
ref|NP_565963.1| phospholipase D (PLDbeta); protein id: At2g4201... 179 3e-44
gb|AAG45488.1| phospholipase PLDb2 [Lycopersicon esculentum] 178 4e-44
sp|P93733|PDB1_ARATH Phospholipase D beta 1 (AtPLDbeta1) (PLD be... 176 2e-43
gb|AAC49656.2| phospholipase D [Arabidopsis thaliana] 176 2e-43
>pir||H84848 phospholipase D [imported] - Arabidopsis thaliana
Length = 832
Score = 179 bits (453), Expect = 3e-44
Identities = 83/113 (73%), Positives = 95/113 (83%)
Frame = -1
Query: 563 QPHQTRARKQCYPRGQIHGYRMSLWAVHTGTIEDCFLLPESLECVKRVRKMGELNWERFS 384
QP T ARK PRGQI+GYRMSLWA H T++DCF PES+ECV++VR MGE NW++F+
Sbjct: 720 QPQHTWARKHSGPRGQIYGYRMSLWAEHMATLDDCFTQPESIECVRKVRTMGERNWKQFA 779
Query: 383 ANDVTEMTGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI 225
A +V++M GHLLKYPVEVDRKGKVRPLPG E FPDVGG IVGSFIAIQENLTI
Sbjct: 780 AEEVSDMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGSFIAIQENLTI 832
>ref|NP_565963.1| phospholipase D (PLDbeta); protein id: At2g42010.1, supported by
cDNA: gi_15284210 [Arabidopsis thaliana]
gi|20198318|gb|AAB63542.2| phospholipase D [Arabidopsis
thaliana]
Length = 828
Score = 179 bits (453), Expect = 3e-44
Identities = 83/113 (73%), Positives = 95/113 (83%)
Frame = -1
Query: 563 QPHQTRARKQCYPRGQIHGYRMSLWAVHTGTIEDCFLLPESLECVKRVRKMGELNWERFS 384
QP T ARK PRGQI+GYRMSLWA H T++DCF PES+ECV++VR MGE NW++F+
Sbjct: 716 QPQHTWARKHSGPRGQIYGYRMSLWAEHMATLDDCFTQPESIECVRKVRTMGERNWKQFA 775
Query: 383 ANDVTEMTGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI 225
A +V++M GHLLKYPVEVDRKGKVRPLPG E FPDVGG IVGSFIAIQENLTI
Sbjct: 776 AEEVSDMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGSFIAIQENLTI 828
>gb|AAG45488.1| phospholipase PLDb2 [Lycopersicon esculentum]
Length = 895
Score = 178 bits (452), Expect = 4e-44
Identities = 83/113 (73%), Positives = 94/113 (82%)
Frame = -1
Query: 563 QPHQTRARKQCYPRGQIHGYRMSLWAVHTGTIEDCFLLPESLECVKRVRKMGELNWERFS 384
QPH T ARKQ P GQIHGYRMSLWA H G +EDCF PESLECV+RVR MGE NW++F+
Sbjct: 783 QPHHTWARKQSTPYGQIHGYRMSLWAEHLGVVEDCFRQPESLECVRRVRSMGEYNWKQFA 842
Query: 383 ANDVTEMTGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI 225
+++VTEM GHLLKYPVEVDRKGKV+ L G FPDVGG I+GSF+AIQENLTI
Sbjct: 843 SDEVTEMRGHLLKYPVEVDRKGKVKNLTGCANFPDVGGNIIGSFLAIQENLTI 895
>sp|P93733|PDB1_ARATH Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta)
Length = 967
Score = 176 bits (445), Expect = 2e-43
Identities = 81/113 (71%), Positives = 94/113 (82%)
Frame = -1
Query: 563 QPHQTRARKQCYPRGQIHGYRMSLWAVHTGTIEDCFLLPESLECVKRVRKMGELNWERFS 384
QP T ARK PRGQI+GYRMSLWA H ++DCF PES+ECV++VR MGE NW++F+
Sbjct: 855 QPQHTWARKHSGPRGQIYGYRMSLWAEHMANLDDCFTQPESIECVRKVRTMGERNWKQFA 914
Query: 383 ANDVTEMTGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI 225
A +V++M GHLLKYPVEVDRKGKVRPLPG E FPDVGG IVG+FIAIQENLTI
Sbjct: 915 AEEVSDMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGTFIAIQENLTI 967
>gb|AAC49656.2| phospholipase D [Arabidopsis thaliana]
Length = 829
Score = 176 bits (445), Expect = 2e-43
Identities = 81/113 (71%), Positives = 94/113 (82%)
Frame = -1
Query: 563 QPHQTRARKQCYPRGQIHGYRMSLWAVHTGTIEDCFLLPESLECVKRVRKMGELNWERFS 384
QP T ARK PRGQI+GYRMSLWA H ++DCF PES+ECV++VR MGE NW++F+
Sbjct: 717 QPQHTWARKHSGPRGQIYGYRMSLWAEHMANLDDCFTQPESIECVRKVRTMGERNWKQFA 776
Query: 383 ANDVTEMTGHLLKYPVEVDRKGKVRPLPGHEEFPDVGGKIVGSFIAIQENLTI 225
A +V++M GHLLKYPVEVDRKGKVRPLPG E FPDVGG IVG+FIAIQENLTI
Sbjct: 777 AEEVSDMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGTFIAIQENLTI 829
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,328,288
Number of Sequences: 1393205
Number of extensions: 10784524
Number of successful extensions: 25503
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 24777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25468
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
