Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005556A_C01 KMC005556A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK68765.1| Unknown protein [Arabidopsis thaliana] gi|2508387... 197 1e-49
ref|NP_200588.1| lipid transfer protein; glossy1 homolog; protei... 197 1e-49
gb|AAN06975.1| cuticle protein [Arabidopsis thaliana] 197 1e-49
pir||T04146 glossy1 homolog - rice (fragment) gi|2213643|gb|AAB8... 193 1e-48
gb|AAC24373.1| CER1-like protein [Arabidopsis thaliana] 79 3e-14
>gb|AAK68765.1| Unknown protein [Arabidopsis thaliana] gi|25083878|gb|AAN72130.1|
Unknown protein [Arabidopsis thaliana]
Length = 151
Score = 197 bits (500), Expect = 1e-49
Identities = 88/104 (84%), Positives = 98/104 (93%)
Frame = -3
Query: 568 ITPREQSWAPRGTHFHQFVVPPILPFRRDCTYGELAAMRLPEDVEGLGSCEYTMERGVVH 389
+TPREQSWAP GTHFHQFVVPPIL FRR+CTYG+LAAM+LP+DVEGLG+CEYTMERGVVH
Sbjct: 45 LTPREQSWAPAGTHFHQFVVPPILKFRRNCTYGDLAAMKLPKDVEGLGTCEYTMERGVVH 104
Query: 388 ACHAGGVVHSLEGWTHHEVGAIDVDRIDVVWKAALKHGLRPVSS 257
ACHAGGVVH LEGW HHEVGAIDVDRID+VW+AA+K+GL VSS
Sbjct: 105 ACHAGGVVHMLEGWKHHEVGAIDVDRIDLVWEAAMKYGLSAVSS 148
>ref|NP_200588.1| lipid transfer protein; glossy1 homolog; protein id: At5g57800.1
[Arabidopsis thaliana] gi|9758349|dbj|BAB08850.1| lipid
transfer protein; glossy1 homolog [Arabidopsis thaliana]
Length = 566
Score = 197 bits (500), Expect = 1e-49
Identities = 88/104 (84%), Positives = 98/104 (93%)
Frame = -3
Query: 568 ITPREQSWAPRGTHFHQFVVPPILPFRRDCTYGELAAMRLPEDVEGLGSCEYTMERGVVH 389
+TPREQSWAP GTHFHQFVVPPIL FRR+CTYG+LAAM+LP+DVEGLG+CEYTMERGVVH
Sbjct: 460 LTPREQSWAPAGTHFHQFVVPPILKFRRNCTYGDLAAMKLPKDVEGLGTCEYTMERGVVH 519
Query: 388 ACHAGGVVHSLEGWTHHEVGAIDVDRIDVVWKAALKHGLRPVSS 257
ACHAGGVVH LEGW HHEVGAIDVDRID+VW+AA+K+GL VSS
Sbjct: 520 ACHAGGVVHMLEGWKHHEVGAIDVDRIDLVWEAAMKYGLSAVSS 563
>gb|AAN06975.1| cuticle protein [Arabidopsis thaliana]
Length = 632
Score = 197 bits (500), Expect = 1e-49
Identities = 88/104 (84%), Positives = 98/104 (93%)
Frame = -3
Query: 568 ITPREQSWAPRGTHFHQFVVPPILPFRRDCTYGELAAMRLPEDVEGLGSCEYTMERGVVH 389
+TPREQSWAP GTHFHQFVVPPIL FRR+CTYG+LAAM+LP+DVEGLG+CEYTMERGVVH
Sbjct: 526 LTPREQSWAPAGTHFHQFVVPPILKFRRNCTYGDLAAMKLPKDVEGLGTCEYTMERGVVH 585
Query: 388 ACHAGGVVHSLEGWTHHEVGAIDVDRIDVVWKAALKHGLRPVSS 257
ACHAGGVVH LEGW HHEVGAIDVDRID+VW+AA+K+GL VSS
Sbjct: 586 ACHAGGVVHMLEGWKHHEVGAIDVDRIDLVWEAAMKYGLSAVSS 629
>pir||T04146 glossy1 homolog - rice (fragment) gi|2213643|gb|AAB87722.1| glossy1
homolog [Oryza sativa]
Length = 555
Score = 193 bits (490), Expect = 1e-48
Identities = 86/101 (85%), Positives = 92/101 (90%)
Frame = -3
Query: 568 ITPREQSWAPRGTHFHQFVVPPILPFRRDCTYGELAAMRLPEDVEGLGSCEYTMERGVVH 389
++PREQ WAP GTHFHQFVVPPI+ FRRDCTYG+LAAMRLPEDVEGLG+CEYTM RGVVH
Sbjct: 454 LSPREQRWAPAGTHFHQFVVPPIIGFRRDCTYGKLAAMRLPEDVEGLGTCEYTMGRGVVH 513
Query: 388 ACHAGGVVHSLEGWTHHEVGAIDVDRIDVVWKAALKHGLRP 266
ACHAGGVVH LEGW HHEVGAIDVDRID VW AAL+HGL P
Sbjct: 514 ACHAGGVVHFLEGWDHHEVGAIDVDRIDAVWNAALRHGLTP 554
>gb|AAC24373.1| CER1-like protein [Arabidopsis thaliana]
Length = 604
Score = 79.3 bits (194), Expect = 3e-14
Identities = 41/103 (39%), Positives = 58/103 (55%), Gaps = 1/103 (0%)
Frame = -3
Query: 568 ITPREQSWAPRGTHFHQFVVPPILPFRRDCTYGELAAMRLPEDVEGLGSCEYTMERGVVH 389
I EQ A GT F F P R+DC Y AMR+P+ + + SCE + R V+
Sbjct: 497 IENEEQMKAKEGTLFVPFSHFPPNKLRKDCFYQSTPAMRVPKSAQNIDSCENWLGRRVMS 556
Query: 388 ACHAGGVVHSLEGWTHHEVG-AIDVDRIDVVWKAALKHGLRPV 263
A GG+VH+LEGW H+ G +V R+ +W+AAL+H +P+
Sbjct: 557 AWKIGGIVHALEGWEEHDCGNTCNVLRLHAIWEAALRHDFQPL 599
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,147,223
Number of Sequences: 1393205
Number of extensions: 10901171
Number of successful extensions: 31178
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 30503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31146
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
