Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005555A_C01 KMC005555A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174458.1| unknown protein; protein id: At1g31780.1 [Arabi... 144 6e-34
gb|AAN52749.1| Hypothetical protein [Oryza sativa (japonica cult... 50 9e-06
ref|XP_130888.2| component of oligomeric golgi complex 6 [Mus mu... 39 0.037
dbj|BAB23168.1| unnamed protein product [Mus musculus] 39 0.037
dbj|BAC41470.1| mKIAA1134 protein [Mus musculus] 37 0.083
>ref|NP_174458.1| unknown protein; protein id: At1g31780.1 [Arabidopsis thaliana]
gi|25403122|pir||D86441 unknown protein [imported] -
Arabidopsis thaliana
gi|12321300|gb|AAG50721.1|AC079041_14 unknown protein
[Arabidopsis thaliana]
Length = 706
Score = 144 bits (362), Expect = 6e-34
Identities = 67/89 (75%), Positives = 81/89 (90%)
Frame = -3
Query: 476 EMEDTSPSILSECLKALFGLILGSESSLPEFEQMQVPRLRSEASIGVARSLAEAYELIYN 297
E +DTSP++LSECLKA FGL+LGSE SLPEFEQ+QVP+LRSEA + VA++LAEAYE+IY
Sbjct: 618 ERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEVIYQ 677
Query: 296 AIMDPKNGYPDPRSLARHPPNQIRTILGI 210
A+ D +NGYPDP+SLARHPP+QIRTILGI
Sbjct: 678 AVTDQQNGYPDPKSLARHPPDQIRTILGI 706
>gb|AAN52749.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 725
Score = 50.4 bits (119), Expect = 9e-06
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -3
Query: 476 EMEDTSPSILSECLKALFGLILGSESSLPEFEQMQ 372
++ +TSP +L ECLKA +GL+ G+E SLPEFEQ+Q
Sbjct: 613 DIVETSPQMLLECLKAFYGLVTGTEGSLPEFEQLQ 647
>ref|XP_130888.2| component of oligomeric golgi complex 6 [Mus musculus]
gi|26327073|dbj|BAC27280.1| unnamed protein product [Mus
musculus]
Length = 657
Score = 38.5 bits (88), Expect = 0.037
Identities = 19/64 (29%), Positives = 33/64 (50%), Gaps = 8/64 (12%)
Frame = -3
Query: 383 EQMQVPRLRSEASIGVARSLAE--------AYELIYNAIMDPKNGYPDPRSLARHPPNQI 228
+ + +P+L S S V + + AY ++ A+M+P N Y DP S+ P Q+
Sbjct: 593 DHLLMPQLNSLLSATVKEQIIKQSTELVCRAYAEVHAAVMNPDNAYKDPESILHRSPEQV 652
Query: 227 RTIL 216
+T+L
Sbjct: 653 KTLL 656
>dbj|BAB23168.1| unnamed protein product [Mus musculus]
Length = 159
Score = 38.5 bits (88), Expect = 0.037
Identities = 19/64 (29%), Positives = 33/64 (50%), Gaps = 8/64 (12%)
Frame = -3
Query: 383 EQMQVPRLRSEASIGVARSLAE--------AYELIYNAIMDPKNGYPDPRSLARHPPNQI 228
+ + +P+L S S V + + AY ++ A+M+P N Y DP S+ P Q+
Sbjct: 95 DHLLMPQLNSLLSATVKEQIIKQSTELVCRAYAEVHAAVMNPDNAYKDPESILHRSPEQV 154
Query: 227 RTIL 216
+T+L
Sbjct: 155 KTLL 158
>dbj|BAC41470.1| mKIAA1134 protein [Mus musculus]
Length = 656
Score = 37.4 bits (85), Expect = 0.083
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 326 LAEAYELIYNAIMDPKNGYPDPRSLARHPPNQIRTIL 216
+ AY ++ A+M+P N Y DP ++ P Q++T+L
Sbjct: 619 ICRAYAEVHAAVMNPDNAYKDPENILHRSPEQVKTLL 655
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,992,752
Number of Sequences: 1393205
Number of extensions: 7668450
Number of successful extensions: 20492
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20486
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
