Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005554A_C01 KMC005554A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA64604.1| C-Serate-1 protein [Gallus gallus] 32 5.3
pir||T47235 sex determining protein [imported] - western wild mo... 32 9.0
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-det... 32 9.0
>emb|CAA64604.1| C-Serate-1 protein [Gallus gallus]
Length = 1193
Score = 32.3 bits (72), Expect = 5.3
Identities = 25/76 (32%), Positives = 34/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 2 TKNWIKPNNYILHSKGMNY--AGLVHITVKQLHLFDHELDTDLEPKAATSKCFGKKNIHV 175
+K W P I+H+KG N AG + VK+ H F H P AA +C+ V
Sbjct: 867 SKVWCGPRPCIIHAKGHNECPAGHACVPVKEDHCFTH-------PCAAVGECWPSNQQPV 919
Query: 176 K*S*LKILRNSYLNNN 223
K K +SY +N
Sbjct: 920 K---TKCNSDSYYQDN 932
>pir||T47235 sex determining protein [imported] - western wild mouse
gi|2271483|gb|AAC53452.1| sex determining protein [Mus
spretus]
Length = 355
Score = 31.6 bits (70), Expect = 9.0
Identities = 19/69 (27%), Positives = 27/69 (38%)
Frame = +2
Query: 410 DHSLMRDQCQNHH*KHLSQFYQKALHLRQLLFPNVDSFPSHMQFHLSNQILPARNSHQHD 589
DH + Q +HH + Q + H +Q D QFH +Q + H H
Sbjct: 202 DHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHP 261
Query: 590 *EQNQGHLH 616
+Q Q H H
Sbjct: 262 QQQQQFHDH 270
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
gi|2623383|gb|AAC53449.1| sex determining protein [Mus
spretus]
Length = 355
Score = 31.6 bits (70), Expect = 9.0
Identities = 19/69 (27%), Positives = 27/69 (38%)
Frame = +2
Query: 410 DHSLMRDQCQNHH*KHLSQFYQKALHLRQLLFPNVDSFPSHMQFHLSNQILPARNSHQHD 589
DH + Q +HH + Q + H +Q D QFH +Q + H H
Sbjct: 202 DHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHP 261
Query: 590 *EQNQGHLH 616
+Q Q H H
Sbjct: 262 QQQQQFHDH 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,659,434
Number of Sequences: 1393205
Number of extensions: 9676371
Number of successful extensions: 20104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20093
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
