Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005544A_C01 KMC005544A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P93568|UGS2_SOLTU Soluble glycogen [starch] synthase, chlorop... 98 1e-19
gb|AAN37578.1| soluble starch synthase I [Colocasia esculenta] 97 2e-19
gb|AAF24126.1|AF121673_1 soluble starch synthase [Arabidopsis th... 97 3e-19
ref|NP_197818.1| starch synthase, putative; protein id: At5g2430... 97 3e-19
gb|AAF37876.1|AF234163_1 starch synthase I [Hordeum vulgare] 92 7e-18
>sp|P93568|UGS2_SOLTU Soluble glycogen [starch] synthase, chloroplast precursor (SS I)
gi|7433863|pir||T07668 starch synthase (EC 2.4.1.21) SSI
precursor - potato gi|1781353|emb|CAA71442.1| soluble
starch (bacterial glycogen) synthase [Solanum tuberosum]
Length = 641
Score = 97.8 bits (242), Expect = 1e-19
Identities = 42/63 (66%), Positives = 50/63 (78%)
Frame = -3
Query: 468 WTFSPLSKESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTWVKAATQYEQIIEWAFMD 289
WTFSPL+ E +L L+ AI TYTE+KS WEGLM+RGM RDY+W AA QYEQ+ WAF+D
Sbjct: 577 WTFSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQVFTWAFID 636
Query: 288 PPY 280
PPY
Sbjct: 637 PPY 639
>gb|AAN37578.1| soluble starch synthase I [Colocasia esculenta]
Length = 643
Score = 97.4 bits (241), Expect = 2e-19
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -3
Query: 468 WTFSPLSKESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTWVKAATQYEQIIEWAFMD 289
W FSPLSK+SML L AI+TY ++K WEGLMKRGM++D+TW AA QYEQ+ WAF+D
Sbjct: 579 WAFSPLSKDSMLKALNLAIRTYRDFKPSWEGLMKRGMSKDFTWDNAAAQYEQVFGWAFID 638
Query: 288 PPY 280
PPY
Sbjct: 639 PPY 641
>gb|AAF24126.1|AF121673_1 soluble starch synthase [Arabidopsis thaliana]
Length = 575
Score = 96.7 bits (239), Expect = 3e-19
Identities = 40/63 (63%), Positives = 48/63 (75%)
Frame = -3
Query: 468 WTFSPLSKESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTWVKAATQYEQIIEWAFMD 289
W F+PLSK+SM+ LR A TY EYK WEGLM+RGM R+Y+W AA QYEQ+ +W FMD
Sbjct: 511 WVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMD 570
Query: 288 PPY 280
PPY
Sbjct: 571 PPY 573
>ref|NP_197818.1| starch synthase, putative; protein id: At5g24300.1 [Arabidopsis
thaliana] gi|29337131|sp|Q9FNF2|UGS2_ARATH Soluble
glycogen [starch] synthase, chloroplast precursor (SSS)
gi|10177090|dbj|BAB10396.1| soluble starch synthase
[Arabidopsis thaliana] gi|22135791|gb|AAM91082.1|
AT5g24300/MOP9_12 [Arabidopsis thaliana]
Length = 652
Score = 96.7 bits (239), Expect = 3e-19
Identities = 40/63 (63%), Positives = 48/63 (75%)
Frame = -3
Query: 468 WTFSPLSKESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTWVKAATQYEQIIEWAFMD 289
W F+PLSK+SM+ LR A TY EYK WEGLM+RGM R+Y+W AA QYEQ+ +W FMD
Sbjct: 588 WVFTPLSKDSMVSALRLAAATYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMD 647
Query: 288 PPY 280
PPY
Sbjct: 648 PPY 650
>gb|AAF37876.1|AF234163_1 starch synthase I [Hordeum vulgare]
Length = 643
Score = 92.0 bits (227), Expect = 7e-18
Identities = 41/63 (65%), Positives = 47/63 (74%)
Frame = -3
Query: 468 WTFSPLSKESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTWVKAATQYEQIIEWAFMD 289
W FSPL+ E ML LR AI T+ E+K WEGLMKRGM +D+TW AA QYEQI EWAF+D
Sbjct: 579 WAFSPLTVEKMLWALRTAISTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVD 638
Query: 288 PPY 280
PY
Sbjct: 639 QPY 641
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,607,304
Number of Sequences: 1393205
Number of extensions: 12229083
Number of successful extensions: 23683
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 22847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23679
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
