Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005532A_C01 KMC005532A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL14628.1|AF417575_1 growth-on protein GRO11 [Euphorbia esula] 38 0.065
ref|NP_171671.1| unknown protein; protein id: At1g01650.1 [Arabi... 36 0.25
pir||D86147 T1N6.3 protein - Arabidopsis thaliana gi|8671842|gb|... 36 0.25
gb|AAL14629.1|AF417576_1 growth-on protein GRO10 [Euphorbia esula] 34 1.2
ref|NP_564815.1| expressed protein; protein id: At1g63690.1, sup... 31 8.0
>gb|AAL14628.1|AF417575_1 growth-on protein GRO11 [Euphorbia esula]
Length = 538
Score = 38.1 bits (87), Expect = 0.065
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 526 RGGLEILWTRGKPRVPCPHIQ 464
RG L+ LWTRG+P PCPH+Q
Sbjct: 511 RGELKALWTRGEPDSPCPHVQ 531
>ref|NP_171671.1| unknown protein; protein id: At1g01650.1 [Arabidopsis thaliana]
Length = 491
Score = 36.2 bits (82), Expect = 0.25
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 529 KRGGLEILWTRGKPRVPCPHIQ 464
KRG L+ LWT G+P PCPH++
Sbjct: 464 KRGDLKTLWTTGEPDRPCPHVR 485
>pir||D86147 T1N6.3 protein - Arabidopsis thaliana
gi|8671842|gb|AAF78405.1|AC009273_11 ESTs gb|AA586244
and gb|T21200 come from this gene. [Arabidopsis
thaliana]
Length = 613
Score = 36.2 bits (82), Expect = 0.25
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 529 KRGGLEILWTRGKPRVPCPHIQ 464
KRG L+ LWT G+P PCPH++
Sbjct: 586 KRGDLKTLWTTGEPDRPCPHVR 607
>gb|AAL14629.1|AF417576_1 growth-on protein GRO10 [Euphorbia esula]
Length = 537
Score = 33.9 bits (76), Expect = 1.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 529 KRGGLEILWTRGKPRVPCPH 470
K G L +LWTRG+P CPH
Sbjct: 509 KNGDLNVLWTRGEPERACPH 528
>ref|NP_564815.1| expressed protein; protein id: At1g63690.1, supported by cDNA:
2571., supported by cDNA: gi_17065461 [Arabidopsis
thaliana] gi|17065462|gb|AAL32885.1| Unknown protein
[Arabidopsis thaliana]
Length = 540
Score = 31.2 bits (69), Expect = 8.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 529 KRGGLEILWTRGKPRVPCPH 470
KR L ILWT+G+P CPH
Sbjct: 511 KRDDLWILWTKGEPERACPH 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,032,039
Number of Sequences: 1393205
Number of extensions: 8885720
Number of successful extensions: 20144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20134
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
