Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005529A_C01 KMC005529A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC68501.1| chaperonin 60 alpha subunit [Canavalia lineata] 221 6e-57
sp|P08926|RUBA_PEA RuBisCO subunit binding-protein alpha subunit... 221 7e-57
sp|P21239|RUB1_BRANA RuBisCO subunit binding-protein alpha subun... 206 2e-52
gb|AAM63618.1| putative rubisco subunit binding-protein alpha su... 197 1e-49
ref|NP_180367.1| putative rubisco subunit binding-protein alpha ... 197 1e-49
>gb|AAC68501.1| chaperonin 60 alpha subunit [Canavalia lineata]
Length = 581
Score = 221 bits (563), Expect = 6e-57
Identities = 111/124 (89%), Positives = 118/124 (94%)
Frame = -2
Query: 598 LVHLSAFVPAIKEKLEDPEERLGADIVQKALVAPASLIAQNAGVEGEVVVEKIKNGEWEV 419
L+HLS VPAIK+KLED +ERLGADIVQKAL+APASLIAQNAG+EGEVVVEK+KNGEWEV
Sbjct: 458 LLHLSTHVPAIKDKLEDADERLGADIVQKALIAPASLIAQNAGIEGEVVVEKVKNGEWEV 517
Query: 418 GYNAMTDKYENLVEAGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKAKPKAPVAAAPQ 239
GYNAMTD+YENLVEAGVIDPAKV RCALQNAASVAGMVLTTQAIVVEK KPKAP AAAPQ
Sbjct: 518 GYNAMTDRYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPTAAAPQ 577
Query: 238 GLTI 227
GLTI
Sbjct: 578 GLTI 581
>sp|P08926|RUBA_PEA RuBisCO subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit) (CPN-60
alpha) gi|7443854|pir||T06518 chaperonin 60 alpha chain
precursor, chloroplast - garden pea
gi|1185390|gb|AAA87731.1| alphacpn60 precursor [Pisum
sativum]
Length = 587
Score = 221 bits (562), Expect = 7e-57
Identities = 113/124 (91%), Positives = 118/124 (95%)
Frame = -2
Query: 598 LVHLSAFVPAIKEKLEDPEERLGADIVQKALVAPASLIAQNAGVEGEVVVEKIKNGEWEV 419
LVHLS +VPAIKEKLED +ERLGADIVQKALVAPA+LIAQNAG+EGEVVVEKIKNGEWEV
Sbjct: 464 LVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEV 523
Query: 418 GYNAMTDKYENLVEAGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKAKPKAPVAAAPQ 239
GYNAMTD YENLVE+GVIDPAKV RCALQNAASVAGMVLTTQAIVVEK KPKA VAAAPQ
Sbjct: 524 GYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQ 583
Query: 238 GLTI 227
GLTI
Sbjct: 584 GLTI 587
>sp|P21239|RUB1_BRANA RuBisCO subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit) (CPN-60
alpha) gi|289365|gb|AAA32979.1| 60-kDa chaperonin-60
alpha-polypeptide precursor
Length = 546
Score = 206 bits (524), Expect = 2e-52
Identities = 104/124 (83%), Positives = 112/124 (89%)
Frame = -2
Query: 598 LVHLSAFVPAIKEKLEDPEERLGADIVQKALVAPASLIAQNAGVEGEVVVEKIKNGEWEV 419
LVHLS +PAIKEKLED +ERLGADIVQKALVAPA+LIAQNAG+EGEVVVEKI EWE+
Sbjct: 423 LVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEI 482
Query: 418 GYNAMTDKYENLVEAGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKAKPKAPVAAAPQ 239
GYNAMTD YENL+EAGVIDPAKV RCALQNAASVAGMVLTTQAIVV+K KPKAP AA PQ
Sbjct: 483 GYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQ 542
Query: 238 GLTI 227
GL +
Sbjct: 543 GLMV 546
>gb|AAM63618.1| putative rubisco subunit binding-protein alpha subunit [Arabidopsis
thaliana]
Length = 586
Score = 197 bits (500), Expect = 1e-49
Identities = 100/124 (80%), Positives = 109/124 (87%)
Frame = -2
Query: 598 LVHLSAFVPAIKEKLEDPEERLGADIVQKALVAPASLIAQNAGVEGEVVVEKIKNGEWEV 419
LVHLS +PAIKE ED +ERLGADIVQKAL++PA+LIAQNAGVEGEVVVEKI +WE
Sbjct: 463 LVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWEN 522
Query: 418 GYNAMTDKYENLVEAGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKAKPKAPVAAAPQ 239
GYNAMTD YENL EAGVIDPAKV RCALQNAASVAGMVLTTQAIVV+K KPKAP AAAP+
Sbjct: 523 GYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPE 582
Query: 238 GLTI 227
GL +
Sbjct: 583 GLMV 586
>ref|NP_180367.1| putative rubisco subunit binding-protein alpha subunit; protein id:
At2g28000.1, supported by cDNA: 25773. [Arabidopsis
thaliana] gi|2506276|sp|P21238|RUBA_ARATH RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit) (CPN-60
alpha) gi|2129561|pir||S71235 chaperonin 60 alpha chain
precursor, chloroplast - Arabidopsis thaliana
gi|1223910|gb|AAA92061.1| chaperonin-60 alpha subunit
[Arabidopsis thaliana] gi|4510416|gb|AAD21502.1|
putative rubisco subunit binding-protein alpha subunit
[Arabidopsis thaliana] gi|27311671|gb|AAO00801.1|
putative rubisco subunit binding-protein alpha subunit
[Arabidopsis thaliana]
Length = 586
Score = 197 bits (500), Expect = 1e-49
Identities = 100/124 (80%), Positives = 109/124 (87%)
Frame = -2
Query: 598 LVHLSAFVPAIKEKLEDPEERLGADIVQKALVAPASLIAQNAGVEGEVVVEKIKNGEWEV 419
LVHLS +PAIKE ED +ERLGADIVQKAL++PA+LIAQNAGVEGEVVVEKI +WE
Sbjct: 463 LVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWEN 522
Query: 418 GYNAMTDKYENLVEAGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKAKPKAPVAAAPQ 239
GYNAMTD YENL EAGVIDPAKV RCALQNAASVAGMVLTTQAIVV+K KPKAP AAAP+
Sbjct: 523 GYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPE 582
Query: 238 GLTI 227
GL +
Sbjct: 583 GLMV 586
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,363,842
Number of Sequences: 1393205
Number of extensions: 10995007
Number of successful extensions: 35133
Number of sequences better than 10.0: 799
Number of HSP's better than 10.0 without gapping: 32188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34492
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
