Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005526A_C01 KMC005526A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177104.1| unknown protein; protein id: At1g69450.1 [Arabi... 100 1e-20
gb|AAO00858.1| Unknown protein [Arabidopsis thaliana] 66 2e-10
pir||S51583 hypothetical protein HYP1 - Arabidopsis thaliana gi|... 66 2e-10
ref|NP_186759.1| unknown protein; protein id: At3g01100.1 [Arabi... 66 2e-10
gb|AAK83615.1| At1g10080/T27I1_10 [Arabidopsis thaliana] 57 1e-07
>ref|NP_177104.1| unknown protein; protein id: At1g69450.1 [Arabidopsis thaliana]
gi|12597787|gb|AAG60099.1|AC073178_10 unknown protein
[Arabidopsis thaliana]
Length = 646
Score = 100 bits (248), Expect = 1e-20
Identities = 47/76 (61%), Positives = 61/76 (79%), Gaps = 3/76 (3%)
Frame = -2
Query: 483 VVTLLFNEYCRKRFLPIFVAYSAETLIRKDREDQNDAAMTEFYDNLVNAYEDPALLPIQ- 307
V TLLFNE+CRKRF+PIF Y AE L ++D+ED+ND M EFY+NLV+AY+DPALLP++
Sbjct: 567 VFTLLFNEFCRKRFMPIFTDYPAEVLTKRDKEDRNDPTMPEFYNNLVSAYKDPALLPLRF 626
Query: 306 --SSSNTDNLSSPLIS 265
S S D+L+SPL+S
Sbjct: 627 SGSGSRNDSLTSPLLS 642
>gb|AAO00858.1| Unknown protein [Arabidopsis thaliana]
Length = 703
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = -2
Query: 483 VVTLLFNEYCRKRFLPIFVAYSAETLIRKDREDQNDAAMTEFYDNLVNAYEDPALLPIQS 304
V+T+LF+ YC++RFLP F +Y + L+ KD+ D+ + M+EFY LV AY DPAL Q
Sbjct: 638 VLTVLFSIYCQRRFLPNFKSYPTQCLVNKDKADEREQNMSEFYSELVVAYRDPALSASQD 697
Query: 303 S 301
S
Sbjct: 698 S 698
>pir||S51583 hypothetical protein HYP1 - Arabidopsis thaliana
gi|499168|emb|CAA56145.1| HYP1 [Arabidopsis thaliana]
Length = 468
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = -2
Query: 483 VVTLLFNEYCRKRFLPIFVAYSAETLIRKDREDQNDAAMTEFYDNLVNAYEDPALLPIQS 304
V+T+LF+ YC++RFLP F +Y + L+ KD+ D+ + M+EFY LV AY DPAL Q
Sbjct: 403 VLTVLFSIYCQRRFLPNFKSYPTQCLVNKDKADEREQNMSEFYSELVVAYRDPALSASQD 462
Query: 303 S 301
S
Sbjct: 463 S 463
>ref|NP_186759.1| unknown protein; protein id: At3g01100.1 [Arabidopsis thaliana]
gi|498707|emb|CAA55187.1| HYP1 [Arabidopsis thaliana]
gi|6714478|gb|AAF26164.1|AC008261_21 unknown protein
[Arabidopsis thaliana]
Length = 468
Score = 66.2 bits (160), Expect = 2e-10
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = -2
Query: 483 VVTLLFNEYCRKRFLPIFVAYSAETLIRKDREDQNDAAMTEFYDNLVNAYEDPALLPIQS 304
V+T+LF+ YC++RFLP F +Y + L+ KD+ D+ + M+EFY LV AY DPAL Q
Sbjct: 403 VLTVLFSIYCQRRFLPNFKSYPTQCLVNKDKADEREQNMSEFYSELVVAYRDPALSASQD 462
Query: 303 S 301
S
Sbjct: 463 S 463
>gb|AAK83615.1| At1g10080/T27I1_10 [Arabidopsis thaliana]
Length = 762
Score = 56.6 bits (135), Expect = 1e-07
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = -2
Query: 483 VVTLLFNEYCRKRFLPIFVAYSAETLIRKDREDQNDAAMTEFYDNLVNAY 334
++TLLF+EYCR+RF PIF Y AE LI DR D+ M E ++NL AY
Sbjct: 635 LLTLLFSEYCRQRFAPIFQKYPAEILIAMDRADEMTGKMEEIHNNLKVAY 684
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,593,030
Number of Sequences: 1393205
Number of extensions: 6881766
Number of successful extensions: 15202
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15198
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
