Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005519A_C01 KMC005519A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD44161.1|AF130423_1 cryptochrome 1 [Lycopersicon esculentum... 115 7e-25
pir||H85089 hypothetical protein AT4g08920 [imported] - Arabidop... 80 2e-14
ref|NP_567341.1| Arabidopsis thaliana flavin-type blue-light pho... 80 2e-14
gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana] 80 2e-14
gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photo... 80 2e-14
>gb|AAD44161.1|AF130423_1 cryptochrome 1 [Lycopersicon esculentum]
gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1
[Lycopersicon esculentum]
Length = 679
Score = 115 bits (287), Expect = 7e-25
Identities = 56/96 (58%), Positives = 75/96 (77%)
Frame = -3
Query: 646 DTLNEGMLQTVHRNTLQYNHTAMELRNAADDSTVDSSGSSRRERDGGIVPEWFPPASSYS 467
DT ++ ++QT N + + A+ RN+ +DST +SS SS RERDGG+VP W P +S+YS
Sbjct: 586 DTRDQAVMQTARTNATPHFNFAVGRRNS-EDSTAESS-SSTRERDGGVVPTWSPSSSNYS 643
Query: 466 EQFVGDENGIGSSSSYLQRHPQSRQLVNWRRLPQTG 359
+Q+VGD+NGIG+SSSYLQRHPQS QL+NW+RL QTG
Sbjct: 644 DQYVGDDNGIGTSSSYLQRHPQSHQLMNWQRLSQTG 679
>pir||H85089 hypothetical protein AT4g08920 [imported] - Arabidopsis thaliana
gi|7267534|emb|CAB78016.1| Arabidopsis thaliana
flavin-type blue-light photoreceptor (SW:Q43125) (Pfam:
PF00875, Score=765.2, E=2.6e-226, N=1)
Length = 716
Score = 80.5 bits (197), Expect = 2e-14
Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Frame = -3
Query: 565 AADDSTVDSSGSSRRERDGGIVPEWFPPASSYSEQFVGDENGIG---SSSSYLQRHPQSR 395
+ +DST +SS S RRER GGIVPEW P YSEQF +ENGIG ++SSYLQ H
Sbjct: 616 STEDSTAESSSSGRRERSGGIVPEWSP---GYSEQFPSEENGIGGGSTTSSYLQNH---H 669
Query: 394 QLVNWRRLPQTG 359
+++NWRRL QTG
Sbjct: 670 EILNWRRLSQTG 681
>ref|NP_567341.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
(SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
N=1); protein id: At4g08920.1, supported by cDNA:
gi_13605524, supported by cDNA: gi_442528, supported by
cDNA: gi_442530 gi|21700897|gb|AAM70572.1| AT4g08920/hy4
[Arabidopsis thaliana]
Length = 681
Score = 80.5 bits (197), Expect = 2e-14
Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Frame = -3
Query: 565 AADDSTVDSSGSSRRERDGGIVPEWFPPASSYSEQFVGDENGIG---SSSSYLQRHPQSR 395
+ +DST +SS S RRER GGIVPEW P YSEQF +ENGIG ++SSYLQ H
Sbjct: 616 STEDSTAESSSSGRRERSGGIVPEWSP---GYSEQFPSEENGIGGGSTTSSYLQNH---H 669
Query: 394 QLVNWRRLPQTG 359
+++NWRRL QTG
Sbjct: 670 EILNWRRLSQTG 681
>gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana]
Length = 681
Score = 80.5 bits (197), Expect = 2e-14
Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Frame = -3
Query: 565 AADDSTVDSSGSSRRERDGGIVPEWFPPASSYSEQFVGDENGIG---SSSSYLQRHPQSR 395
+ +DST +SS S RRER GGIVPEW P YSEQF +ENGIG ++SSYLQ H
Sbjct: 616 STEDSTAESSSSGRRERSGGIVPEWSP---GYSEQFPSEENGIGGGSTTSSYLQNH---H 669
Query: 394 QLVNWRRLPQTG 359
+++NWRRL QTG
Sbjct: 670 EILNWRRLSQTG 681
>gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
(SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
N=1)
Length = 702
Score = 80.5 bits (197), Expect = 2e-14
Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Frame = -3
Query: 565 AADDSTVDSSGSSRRERDGGIVPEWFPPASSYSEQFVGDENGIG---SSSSYLQRHPQSR 395
+ +DST +SS S RRER GGIVPEW P YSEQF +ENGIG ++SSYLQ H
Sbjct: 602 STEDSTAESSSSGRRERSGGIVPEWSP---GYSEQFPSEENGIGGGSTTSSYLQNH---H 655
Query: 394 QLVNWRRLPQTG 359
+++NWRRL QTG
Sbjct: 656 EILNWRRLSQTG 667
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,313,821
Number of Sequences: 1393205
Number of extensions: 13224987
Number of successful extensions: 30124
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 29386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30112
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
