Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005518A_C01 KMC005518A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02757.1| gene_id:MGL6.12~unknown protein [Arabidopsis tha... 107 2e-22
dbj|BAC41981.1| unknown protein [Arabidopsis thaliana] 107 2e-22
ref|NP_188289.1| unknown protein; protein id: At3g16670.1, suppo... 93 4e-18
ref|NP_500827.1| Putative nuclear protein, nematode specific (92... 34 1.7
ref|NP_006221.1| polymerase (DNA directed), delta 2, regulatory ... 33 3.8
>dbj|BAB02757.1| gene_id:MGL6.12~unknown protein [Arabidopsis thaliana]
Length = 211
Score = 107 bits (267), Expect = 2e-22
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 26/170 (15%)
Frame = +1
Query: 37 KHLIMMISLLIAVMAIPQAHAQLGI------------------------LNDLLGSVNIQ 144
KH+ + + L+ V+ P A AQLG+ + +L VNI
Sbjct: 38 KHMTVSLILVCLVVVSPMAEAQLGLGGSGGLGGLIGGLVGGLGGLVGGLVGGILNLVNIN 97
Query: 145 GTVSCTSNDNNVAAAIPGFSNAQVQLQCGE--KVFSDATTDGDGMFSMMVNPLLYDLSSL 318
G V C+ N + P F+NA V+LQCG +V S ATT+ G+FS+ + + LS+L
Sbjct: 98 GVVFCSLNGAPSGTSTPAFANAGVELQCGRQNRVVSTATTNAAGLFSLPTDSIQMLLSTL 157
Query: 319 LSGCNLVIPTPLSQCNSNLPSIGGLISTLRYVGLSHVGTETIANMEPSGF 468
LS C +V+ TPLS CN+NLPS+G L+S L +G S G I ++ P+GF
Sbjct: 158 LSDCRVVVTTPLSTCNANLPSVGNLVSRLAMIGNSLTGLLNIISIIPAGF 207
>dbj|BAC41981.1| unknown protein [Arabidopsis thaliana]
Length = 180
Score = 107 bits (267), Expect = 2e-22
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 26/170 (15%)
Frame = +1
Query: 37 KHLIMMISLLIAVMAIPQAHAQLGI------------------------LNDLLGSVNIQ 144
KH+ + + L+ V+ P A AQLG+ + +L VNI
Sbjct: 7 KHMTVSLILVCLVVVSPMAEAQLGLGGSGGLGGLIGGLVGGLGGLVGGLVGGILNLVNIN 66
Query: 145 GTVSCTSNDNNVAAAIPGFSNAQVQLQCGE--KVFSDATTDGDGMFSMMVNPLLYDLSSL 318
G V C+ N + P F+NA V+LQCG +V S ATT+ G+FS+ + + LS+L
Sbjct: 67 GVVFCSLNGAPSGTSTPAFANAGVELQCGRQNRVVSTATTNAAGLFSLPTDSIQMLLSTL 126
Query: 319 LSGCNLVIPTPLSQCNSNLPSIGGLISTLRYVGLSHVGTETIANMEPSGF 468
LS C +V+ TPLS CN+NLPS+G L+S L +G S G I ++ P+GF
Sbjct: 127 LSDCRVVVTTPLSTCNANLPSVGNLVSRLAMIGNSLTGLLNIISIIPAGF 176
>ref|NP_188289.1| unknown protein; protein id: At3g16670.1, supported by cDNA:
gi_20856563 [Arabidopsis thaliana]
gi|11994622|dbj|BAB02759.1| gene_id:MGL6.14~unknown
protein [Arabidopsis thaliana]
gi|20856564|gb|AAM26673.1| AT3g16670/MGL6_12
[Arabidopsis thaliana] gi|23505767|gb|AAN28743.1|
At3g16670/MGL6_12 [Arabidopsis thaliana]
Length = 154
Score = 92.8 bits (229), Expect = 4e-18
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Frame = +1
Query: 25 AMTLKHLIMMISLLIAVMAIPQAHAQLGILNDLLGSVN---IQGTVSCTSNDNNV-AAAI 192
A+ KH+ + LL ++ P A+AQ G LG +N I G + CT N +
Sbjct: 2 AVIKKHITFSLVLLCLIVVSPMANAQSG-----LGGINVPIINGVLFCTINGAPLNGTPA 56
Query: 193 PGFSNAQVQLQCGE--KVFSDATTDGDGMFSMMVNPLLYDLSSLLSGCNLVIPTPLSQCN 366
P F+NA VQLQCG +V ++ T+ G+F+ N + L +LL+ C +V+PTP S C+
Sbjct: 57 PAFANAVVQLQCGNLNRVVAETITNIAGLFTFSTNGIQISLPTLLNDCRIVVPTPRSSCD 116
Query: 367 SNLPSIGGLISTLRYVGLSHVGTETIANMEPSGF 468
+ LPS G LIS L VG G I + P+GF
Sbjct: 117 ATLPSTGQLISQLNLVGSIVSGLLNIVAILPTGF 150
>ref|NP_500827.1| Putative nuclear protein, nematode specific (92.8 kD)
[Caenorhabditis elegans] gi|7507738|pir||T29560
hypothetical protein T12E12.3 - Caenorhabditis elegans
gi|1397244|gb|AAB03119.1| Hypothetical protein T12E12.3
[Caenorhabditis elegans]
Length = 818
Score = 34.3 bits (77), Expect = 1.7
Identities = 26/82 (31%), Positives = 34/82 (40%), Gaps = 2/82 (2%)
Frame = -2
Query: 326 PLSREDRS*SRGFTIIENI--PSPSVVASENTFSPHCSCT*AFEKPGIAAATLLSLEVQE 153
P DRS S ++NI PSP V S T S S + ++PG + S V+E
Sbjct: 288 PAGHRDRSPSSPMAHLDNIQPPSPIQVVSNPTLSSELSSRASRDQPGPSRPRSQSANVRE 347
Query: 152 TVP*ILTEPRRSFRIPSWAWAW 87
T E R F + AW
Sbjct: 348 TYAPKRIEKRTKFTVDDHVVAW 369
>ref|NP_006221.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa;
polymerase (DNA directed), delta 2, regulatory subunit
(50kD) [Homo sapiens] gi|1352307|sp|P49005|DPD2_HUMAN
DNA polymerase delta subunit 2 gi|2135015|pir||I38950
DNA-directed DNA polymerase (EC 2.7.7.7) delta
regulatory chain - human gi|1008458|gb|AAC50216.1| DNA
polymerase delta small subunit gi|9963918|gb|AAG09763.1|
DNA polymerase delta small subunit [Homo sapiens]
gi|12653379|gb|AAH00459.1|AAH00459 polymerase (DNA
directed), delta 2, regulatory subunit (50kD) [Homo
sapiens] gi|21430983|gb|AAM51148.1| polymerase (DNA
directed), delta 2, regulatory subunit (50kD) [Homo
sapiens]
Length = 469
Score = 33.1 bits (74), Expect = 3.8
Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 4/64 (6%)
Frame = -2
Query: 407 RRVDISPPIEGRLELHWESGVGITRLQPLSREDRS*SRGFTIIENIP-SPSV---VASEN 240
R + + P +E R + HW SGVG+ +L L E++ G T+ + +P PS+ V+ E+
Sbjct: 57 RLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVG-TLFKAMPLQPSILREVSEEH 115
Query: 239 TFSP 228
P
Sbjct: 116 NLLP 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 634,995,010
Number of Sequences: 1393205
Number of extensions: 14530835
Number of successful extensions: 32759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32735
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
