Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005507A_C01 KMC005507A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22437|CHLD_PEA Magnesium-chelatase subunit chlD, chloroplast... 157 1e-49
sp|O24133|CHLD_TOBAC Magnesium-chelatase subunit chlD, chloropla... 149 2e-47
emb|CAB58179.1| Mg-protoporphyrin IX [Hordeum vulgare] 153 4e-47
pir||B86218 protein T27G7.20 [imported] - Arabidopsis thaliana g... 148 2e-46
gb|AAL36177.1| putative Mg-chelatase [Arabidopsis thaliana] gi|2... 148 2e-46
>sp|O22437|CHLD_PEA Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
D) gi|7488839|pir||T06249 protoporphyrin IX magnesium
chelatase (EC 4.99.1.-) D chain - garden pea
gi|2318117|gb|AAB72194.1| Mg-chelatase subunit D [Pisum
sativum]
Length = 754
Score = 157 bits (396), Expect(2) = 1e-49
Identities = 80/88 (90%), Positives = 85/88 (95%)
Frame = -2
Query: 594 AVRVGLNAETSGDVGRIMIVAITDGRANISLKRSNDPEAAAAADAPKPSAKELKDEILEV 415
AVRVGLNAE SGDVGRIMIVAITDGRANISLKRSNDPEAAAA+DAPKP+++ELKDEI+EV
Sbjct: 633 AVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSNDPEAAAASDAPKPTSQELKDEIIEV 692
Query: 414 AGKIYKAGMSLLVIDTENKFVSTGFAKE 331
A KIYK GMSLLVIDTENKFVSTGFAKE
Sbjct: 693 AAKIYKTGMSLLVIDTENKFVSTGFAKE 720
Score = 62.0 bits (149), Expect(2) = 1e-49
Identities = 29/36 (80%), Positives = 34/36 (93%)
Frame = -3
Query: 335 RSIARVAQGKYYYLPNASDAVISFATKEALSALKNS 228
+ IARVAQGKYYYLPNASDAV+S AT+EAL+ALK+S
Sbjct: 719 KEIARVAQGKYYYLPNASDAVVSLATREALAALKSS 754
>sp|O24133|CHLD_TOBAC Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
D) gi|7489191|pir||T02925 protoporphyrin IX magnesium
chelatase (EC 4.99.1.-) chain chlD - common tobacco
gi|2239151|emb|CAA71128.1| CHLD magnesium chelatase
subunit [Nicotiana tabacum]
Length = 758
Score = 149 bits (375), Expect(2) = 2e-47
Identities = 78/88 (88%), Positives = 83/88 (93%)
Frame = -2
Query: 594 AVRVGLNAETSGDVGRIMIVAITDGRANISLKRSNDPEAAAAADAPKPSAKELKDEILEV 415
AVRVG+NAE SGDVGRIMIVAITDGRANISLKRS DPEA A+ DAP+PS++ELKDEILEV
Sbjct: 638 AVRVGMNAEKSGDVGRIMIVAITDGRANISLKRSTDPEAEAS-DAPRPSSQELKDEILEV 696
Query: 414 AGKIYKAGMSLLVIDTENKFVSTGFAKE 331
AGKIYK GMSLLVIDTENKFVSTGFAKE
Sbjct: 697 AGKIYKTGMSLLVIDTENKFVSTGFAKE 724
Score = 62.4 bits (150), Expect(2) = 2e-47
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = -3
Query: 335 RSIARVAQGKYYYLPNASDAVISFATKEALSALKNS 228
+ IARVAQGKYYYLPNASDAVIS ATK+ALSALK S
Sbjct: 723 KEIARVAQGKYYYLPNASDAVISAATKDALSALKES 758
>emb|CAB58179.1| Mg-protoporphyrin IX [Hordeum vulgare]
Length = 375
Score = 153 bits (387), Expect(2) = 4e-47
Identities = 77/88 (87%), Positives = 85/88 (96%)
Frame = -2
Query: 594 AVRVGLNAETSGDVGRIMIVAITDGRANISLKRSNDPEAAAAADAPKPSAKELKDEILEV 415
AVRVGLNAE SGDVGRIMIVAITDGRAN+SLK+SNDPEAAAA+DAP+PS +ELKDEIL+V
Sbjct: 255 AVRVGLNAEKSGDVGRIMIVAITDGRANVSLKKSNDPEAAAASDAPRPSTQELKDEILDV 314
Query: 414 AGKIYKAGMSLLVIDTENKFVSTGFAKE 331
+ KI+KAGMSLLVIDTENKFVSTGFAKE
Sbjct: 315 SAKIFKAGMSLLVIDTENKFVSTGFAKE 342
Score = 56.6 bits (135), Expect(2) = 4e-47
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = -3
Query: 335 RSIARVAQGKYYYLPNASDAVISFATKEALSALKN 231
+ IARVAQGKYYYLPNASDAVIS ATK AL+ LK+
Sbjct: 341 KEIARVAQGKYYYLPNASDAVISAATKTALADLKS 375
>pir||B86218 protein T27G7.20 [imported] - Arabidopsis thaliana
gi|6664313|gb|AAF22895.1|AC006932_12 T27G7.20
[Arabidopsis thaliana]
Length = 778
Score = 148 bits (374), Expect(2) = 2e-46
Identities = 78/88 (88%), Positives = 83/88 (93%)
Frame = -2
Query: 594 AVRVGLNAETSGDVGRIMIVAITDGRANISLKRSNDPEAAAAADAPKPSAKELKDEILEV 415
AVRVGLNAE SGDVGRIMIVAITDGRANI+LKRS DPE+ A DAP+P++KELKDEILEV
Sbjct: 658 AVRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAP-DAPRPTSKELKDEILEV 716
Query: 414 AGKIYKAGMSLLVIDTENKFVSTGFAKE 331
AGKIYKAGMSLLVIDTENKFVSTGFAKE
Sbjct: 717 AGKIYKAGMSLLVIDTENKFVSTGFAKE 744
Score = 59.7 bits (143), Expect(2) = 2e-46
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -3
Query: 335 RSIARVAQGKYYYLPNASDAVISFATKEALSALKNS 228
+ IARVAQGKYYYLPNASDAVIS T++ALS LKNS
Sbjct: 743 KEIARVAQGKYYYLPNASDAVISATTRDALSDLKNS 778
>gb|AAL36177.1| putative Mg-chelatase [Arabidopsis thaliana]
gi|20259647|gb|AAM14341.1| putative Mg-chelatase
[Arabidopsis thaliana]
Length = 760
Score = 148 bits (374), Expect(2) = 2e-46
Identities = 78/88 (88%), Positives = 83/88 (93%)
Frame = -2
Query: 594 AVRVGLNAETSGDVGRIMIVAITDGRANISLKRSNDPEAAAAADAPKPSAKELKDEILEV 415
AVRVGLNAE SGDVGRIMIVAITDGRANI+LKRS DPE+ A DAP+P++KELKDEILEV
Sbjct: 640 AVRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAP-DAPRPTSKELKDEILEV 698
Query: 414 AGKIYKAGMSLLVIDTENKFVSTGFAKE 331
AGKIYKAGMSLLVIDTENKFVSTGFAKE
Sbjct: 699 AGKIYKAGMSLLVIDTENKFVSTGFAKE 726
Score = 59.7 bits (143), Expect(2) = 2e-46
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -3
Query: 335 RSIARVAQGKYYYLPNASDAVISFATKEALSALKNS 228
+ IARVAQGKYYYLPNASDAVIS T++ALS LKNS
Sbjct: 725 KEIARVAQGKYYYLPNASDAVISATTRDALSDLKNS 760
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,076,719
Number of Sequences: 1393205
Number of extensions: 10051069
Number of successful extensions: 28884
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 27960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28857
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
