Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005500A_C01 KMC005500A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA06820.1| acyl-coA synthetase [Cicer arietinum] 229 2e-59
ref|NP_194116.1| acyl-CoA synthetase - like protein; protein id:... 196 3e-49
dbj|BAC21283.1| similar to long-chain-fatty-acid--CoA ligase 1 [... 194 8e-49
pir||T07929 probable long-chain-fatty-acid-CoA ligase (EC 6.2.1.... 192 3e-48
dbj|BAC01252.1| putative acyl-CoA synthetase [Oryza sativa (japo... 191 9e-48
>emb|CAA06820.1| acyl-coA synthetase [Cicer arietinum]
Length = 162
Score = 229 bits (584), Expect = 2e-59
Identities = 109/131 (83%), Positives = 120/131 (91%)
Frame = -1
Query: 640 ENLENIYGQVSSIESIWVYGNSLESFLVAVVTPRQQALAHWPGENGISLDFDSLCQDSRA 461
ENLENI+GQV SIESIWVYGNS E+FLVAVV PR+QAL HW +NGIS+DF+SLC+DSRA
Sbjct: 32 ENLENIFGQVPSIESIWVYGNSFEAFLVAVVNPRKQALEHWAEQNGISMDFNSLCEDSRA 91
Query: 460 KSYVLGELSKIAKEKKLKGFEFIRAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQEIID 281
K Y+L ELSKI KEKKLKGFEFI+AVHLDPVPFDMERDLITPTYKKKRPQLLK+YQ +ID
Sbjct: 92 KGYILEELSKIGKEKKLKGFEFIKAVHLDPVPFDMERDLITPTYKKKRPQLLKHYQSVID 151
Query: 280 NMYKSGSKPSA 248
NMYKSGSKP A
Sbjct: 152 NMYKSGSKPRA 162
>ref|NP_194116.1| acyl-CoA synthetase - like protein; protein id: At4g23850.1,
supported by cDNA: gi_15146195, supported by cDNA:
gi_20805868 [Arabidopsis thaliana]
gi|7437843|pir||T08904 probable
long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) T32A16.20
- Arabidopsis thaliana gi|4972089|emb|CAB43885.1|
acyl-CoA synthetase-like protein [Arabidopsis thaliana]
gi|7269234|emb|CAB81303.1| acyl-CoA synthetase-like
protein [Arabidopsis thaliana]
gi|15146196|gb|AAK83581.1| AT4g23850/T32A16_20
[Arabidopsis thaliana]
gi|20805869|gb|AAM28871.1|AF503754_1 long chain acyl-CoA
synthetase 4 [Arabidopsis thaliana]
Length = 666
Score = 196 bits (497), Expect = 3e-49
Identities = 84/125 (67%), Positives = 107/125 (85%)
Frame = -1
Query: 640 ENLENIYGQVSSIESIWVYGNSLESFLVAVVTPRQQALAHWPGENGISLDFDSLCQDSRA 461
EN+ENIYG+V +++S+WVYGNS ESFL+A+ P Q L W ENG+S D+D+LCQ+ +A
Sbjct: 533 ENIENIYGEVQAVDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKA 592
Query: 460 KSYVLGELSKIAKEKKLKGFEFIRAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQEIID 281
K ++LGEL K+AKEKK+KGFE I+A+HLDPVPFDMERDL+TPT+KKKRPQLLKYYQ +ID
Sbjct: 593 KEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVID 652
Query: 280 NMYKS 266
MYK+
Sbjct: 653 EMYKT 657
>dbj|BAC21283.1| similar to long-chain-fatty-acid--CoA ligase 1 [Oryza sativa
(japonica cultivar-group)]
Length = 657
Score = 194 bits (493), Expect = 8e-49
Identities = 90/124 (72%), Positives = 104/124 (83%)
Frame = -1
Query: 640 ENLENIYGQVSSIESIWVYGNSLESFLVAVVTPRQQALAHWPGENGISLDFDSLCQDSRA 461
ENLEN+YG + I+SIW+YGNS ESFLVAV+ P QQ L HW +NGIS LC++SRA
Sbjct: 531 ENLENVYGVLQEIDSIWIYGNSFESFLVAVINPNQQVLEHWAEQNGISGSLSELCENSRA 590
Query: 460 KSYVLGELSKIAKEKKLKGFEFIRAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQEIID 281
K Y+L EL+KIAKEKKLKG+EFIRAVHLDP+PFDMERDLITPTYKKKRPQLLK+YQ ID
Sbjct: 591 KEYILSELTKIAKEKKLKGYEFIRAVHLDPLPFDMERDLITPTYKKKRPQLLKHYQGTID 650
Query: 280 NMYK 269
+YK
Sbjct: 651 ALYK 654
>pir||T07929 probable long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) isoform 2 -
rape gi|1617270|emb|CAA64327.1| acyl-CoA synthetase
[Brassica napus]
Length = 667
Score = 192 bits (488), Expect = 3e-48
Identities = 86/131 (65%), Positives = 110/131 (83%)
Frame = -1
Query: 640 ENLENIYGQVSSIESIWVYGNSLESFLVAVVTPRQQALAHWPGENGISLDFDSLCQDSRA 461
ENLENIYG+V +++S+WVYGNS ESFL+AV P Q L W ENG+S D+++LCQ+++A
Sbjct: 534 ENLENIYGEVQAVDSVWVYGNSFESFLIAVANPNQHILEKWAAENGVSGDYNALCQNAKA 593
Query: 460 KSYVLGELSKIAKEKKLKGFEFIRAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQEIID 281
K ++LGEL K+ KEKK+KGFE I+AVHLDPVPFDMERDL+TPTYKKKRPQLLK+YQ +ID
Sbjct: 594 KEFILGELVKMGKEKKMKGFEIIKAVHLDPVPFDMERDLLTPTYKKKRPQLLKHYQCVID 653
Query: 280 NMYKSGSKPSA 248
MYK+ ++ A
Sbjct: 654 EMYKTTNESLA 664
>dbj|BAC01252.1| putative acyl-CoA synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 567
Score = 191 bits (484), Expect = 9e-48
Identities = 87/125 (69%), Positives = 105/125 (83%)
Frame = -1
Query: 640 ENLENIYGQVSSIESIWVYGNSLESFLVAVVTPRQQALAHWPGENGISLDFDSLCQDSRA 461
ENLENI+GQ ++SIWVYGNS ES LVAVV P +QAL W NG++ DF ++C+D +A
Sbjct: 441 ENLENIFGQAPGVDSIWVYGNSFESCLVAVVNPNKQALERWAESNGVTGDFATMCEDPKA 500
Query: 460 KSYVLGELSKIAKEKKLKGFEFIRAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQEIID 281
K ++LGEL+K KEKKLKGFE IRAVHL+PVPFDM+RDLITPTYKKKRPQLLKYYQ +ID
Sbjct: 501 KEFILGELTKTGKEKKLKGFELIRAVHLEPVPFDMDRDLITPTYKKKRPQLLKYYQNVID 560
Query: 280 NMYKS 266
+MYK+
Sbjct: 561 SMYKN 565
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,453,499
Number of Sequences: 1393205
Number of extensions: 12137532
Number of successful extensions: 32477
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 31250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32417
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
