Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005498A_C01 KMC005498A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB76913.1| hypothetical protein [Cicer arietinum] 120 1e-26
pir||B96776 hypothetical protein F25A4.33 [imported] - Arabidops... 77 1e-13
gb|AAG52386.1|AC011765_38 unknown protein; 120049-117988 [Arabid... 77 1e-13
ref|NP_177607.2| hypothetical protein; protein id: At1g74690.1, ... 77 1e-13
pir||C86322 hypothetical protein F6A14.7 [imported] - Arabidopsi... 74 1e-12
>emb|CAB76913.1| hypothetical protein [Cicer arietinum]
Length = 314
Score = 120 bits (302), Expect = 1e-26
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = -2
Query: 628 LPSYMAATESAKAKLRAQDSPRFEQDVSERNSPAGRHSIPSSTNHKISSHSPGTRRSVPT 449
+PSYMAATESAKAKLRAQ SPRF QD SE+N+ A RHS+PS TN KI+SHSP T+R +
Sbjct: 226 IPSYMAATESAKAKLRAQGSPRFGQDGSEKNNNARRHSLPSLTNSKITSHSPRTQRPAQS 285
Query: 448 DGRGGHRNERTISSSRGGNGMVVQEEWRR 362
G+ GH++++ +SSSR GNG V+Q EW+R
Sbjct: 286 GGKVGHKSDKAVSSSRDGNGKVIQAEWKR 314
>pir||B96776 hypothetical protein F25A4.33 [imported] - Arabidopsis thaliana
gi|5882749|gb|AAD55302.1|AC008263_33 Contains 2 PF|00612
IQ calmodulin-binding motif domains. [Arabidopsis
thaliana]
Length = 570
Score = 77.4 bits (189), Expect = 1e-13
Identities = 41/81 (50%), Positives = 56/81 (68%), Gaps = 1/81 (1%)
Frame = -2
Query: 628 LPSYMAATESAKAKLRAQDSPRF-EQDVSERNSPAGRHSIPSSTNHKISSHSPGTRRSVP 452
+PSYM AT+SAKAKLR Q SP+ EQD +E+ + RHS+PS N +I+SHSP T R
Sbjct: 490 IPSYMQATKSAKAKLRLQGSPKSAEQDGTEKATVPRRHSLPSPGNGRITSHSPRTTRLAN 549
Query: 451 TDGRGGHRNERTISSSRGGNG 389
+ + G++ E+ + SSR GNG
Sbjct: 550 SGDKTGNKKEKPLLSSREGNG 570
>gb|AAG52386.1|AC011765_38 unknown protein; 120049-117988 [Arabidopsis thaliana]
Length = 570
Score = 77.4 bits (189), Expect = 1e-13
Identities = 41/81 (50%), Positives = 56/81 (68%), Gaps = 1/81 (1%)
Frame = -2
Query: 628 LPSYMAATESAKAKLRAQDSPRF-EQDVSERNSPAGRHSIPSSTNHKISSHSPGTRRSVP 452
+PSYM AT+SAKAKLR Q SP+ EQD +E+ + RHS+PS N +I+SHSP T R
Sbjct: 490 IPSYMQATKSAKAKLRLQGSPKSAEQDGTEKATVPRRHSLPSPGNGRITSHSPRTTRLAN 549
Query: 451 TDGRGGHRNERTISSSRGGNG 389
+ + G++ E+ + SSR GNG
Sbjct: 550 SGDKTGNKKEKPLLSSREGNG 570
>ref|NP_177607.2| hypothetical protein; protein id: At1g74690.1, supported by cDNA:
gi_20466425 [Arabidopsis thaliana]
gi|20466426|gb|AAM20530.1| unknown protein [Arabidopsis
thaliana] gi|22136364|gb|AAM91260.1| unknown protein
[Arabidopsis thaliana]
Length = 587
Score = 77.4 bits (189), Expect = 1e-13
Identities = 42/90 (46%), Positives = 58/90 (63%), Gaps = 1/90 (1%)
Frame = -2
Query: 628 LPSYMAATESAKAKLRAQDSPRF-EQDVSERNSPAGRHSIPSSTNHKISSHSPGTRRSVP 452
+PSYM AT+SAKAKLR Q SP+ EQD +E+ + RHS+PS N +I+SHSP T R
Sbjct: 498 IPSYMQATKSAKAKLRLQGSPKSAEQDGTEKATVPRRHSLPSPGNGRITSHSPRTTRLAN 557
Query: 451 TDGRGGHRNERTISSSRGGNGMVVQEEWRR 362
+ + G++ E+ + SSR GN E +R
Sbjct: 558 SGDKTGNKKEKPLLSSREGNAKTTPAERKR 587
>pir||C86322 hypothetical protein F6A14.7 [imported] - Arabidopsis thaliana
gi|6730702|gb|AAF27097.1|AC011809_6 Unknown protein
[Arabidopsis thaliana]
Length = 482
Score = 74.3 bits (181), Expect = 1e-12
Identities = 44/90 (48%), Positives = 58/90 (63%), Gaps = 1/90 (1%)
Frame = -2
Query: 628 LPSYMAATESAKAKLRAQDSPRFEQDVSERNSPAGRHSIPSSTNH-KISSHSPGTRRSVP 452
+PSYM AT+SAKAKLR Q S Q + + R+S+PSS N KI+SHSP TR S
Sbjct: 395 IPSYMQATKSAKAKLRLQGSSSPRQ-LGTTEKASRRYSLPSSGNSAKITSHSPKTRVS-N 452
Query: 451 TDGRGGHRNERTISSSRGGNGMVVQEEWRR 362
+ G+ G++ E+T+ SSR GNG EW+R
Sbjct: 453 SSGKSGNKTEKTLLSSREGNGKATPVEWKR 482
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,995,246
Number of Sequences: 1393205
Number of extensions: 12382150
Number of successful extensions: 33173
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 31801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33131
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
