Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005494A_C01 KMC005494A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL36253.1| putative PTR2 family peptide transporter protein ... 71 1e-11
ref|NP_181578.1| putative PTR2 family peptide transporter; prote... 71 1e-11
ref|NP_190982.1| peptide transport - like protein; protein id: A... 53 4e-06
dbj|BAB64122.1| P0039A07.31 [Oryza sativa (japonica cultivar-gro... 50 2e-05
dbj|BAB86548.1| contains EST AU065194(E60541)~similar to oligope... 50 2e-05
>gb|AAL36253.1| putative PTR2 family peptide transporter protein [Arabidopsis
thaliana]
Length = 583
Score = 71.2 bits (173), Expect = 1e-11
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Frame = -1
Query: 654 KSWIGDNLNDCHLDYYYGFLLVLSSLNLLAFLWASSRYIYKR--ESVRVKEALCVQMEGN 481
KSWIG+NLND LDYYYGFL+V+S +N+ F+WA+S+Y+YK ++ CVQME
Sbjct: 515 KSWIGNNLNDSRLDYYYGFLVVISIVNMGLFVWAASKYVYKSDDDTKEFSGGGCVQMEAK 574
Query: 480 PTLDAS 463
LD S
Sbjct: 575 -ALDTS 579
>ref|NP_181578.1| putative PTR2 family peptide transporter; protein id: At2g40460.1,
supported by cDNA: gi_17380881, supported by cDNA:
gi_20453067 [Arabidopsis thaliana]
gi|25408705|pir||G84829 probable PTR2 family peptide
transporter [imported] - Arabidopsis thaliana
gi|2651310|gb|AAB87590.1| putative PTR2 family peptide
transporter [Arabidopsis thaliana]
gi|20453068|gb|AAM19779.1| At2g40460/T2P4.19
[Arabidopsis thaliana] gi|23297804|gb|AAN13029.1|
putative PTR2 family peptide transporter [Arabidopsis
thaliana] gi|25090213|gb|AAN72253.1| At2g40460/T2P4.19
[Arabidopsis thaliana]
Length = 583
Score = 71.2 bits (173), Expect = 1e-11
Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Frame = -1
Query: 654 KSWIGDNLNDCHLDYYYGFLLVLSSLNLLAFLWASSRYIYKR--ESVRVKEALCVQMEGN 481
KSWIG+NLND LDYYYGFL+V+S +N+ F+WA+S+Y+YK ++ CVQME
Sbjct: 515 KSWIGNNLNDSRLDYYYGFLVVISIVNMGLFVWAASKYVYKSDDDTKEFSGGGCVQMEAK 574
Query: 480 PTLDAS 463
LD S
Sbjct: 575 -ALDTS 579
>ref|NP_190982.1| peptide transport - like protein; protein id: At3g54140.1,
supported by cDNA: 117581., supported by cDNA:
gi_13430485, supported by cDNA: gi_21280968 [Arabidopsis
thaliana] gi|11358607|pir||T47573 peptide transport-like
protein - Arabidopsis thaliana
gi|6822060|emb|CAB70988.1| peptide transport-like
protein [Arabidopsis thaliana]
gi|13430486|gb|AAK25865.1|AF360155_1 putative peptide
transport protein [Arabidopsis thaliana]
gi|21280969|gb|AAM44932.1| putative peptide transport
protein [Arabidopsis thaliana]
gi|21537000|gb|AAM61341.1| peptide transport-like
protein [Arabidopsis thaliana]
Length = 570
Score = 52.8 bits (125), Expect = 4e-06
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = -1
Query: 648 WIGDNLNDCHLDYYYGFLLVLSSLNLLAFLWASSRYIYKR 529
WI DNLN HLDY++ L LS LN L +LW S RY YK+
Sbjct: 525 WIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKK 564
>dbj|BAB64122.1| P0039A07.31 [Oryza sativa (japonica cultivar-group)]
gi|19571122|dbj|BAB86546.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|20146494|dbj|BAB89273.1| P0491F11.7 [Oryza sativa
(japonica cultivar-group)]
Length = 586
Score = 50.4 bits (119), Expect = 2e-05
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -1
Query: 654 KSWIGDNLNDCHLDYYYGFLLVLSSLNLLAFLWASSRYIYKRE 526
+SW DNLN HLDY+Y L L++L + F++ + RY+YK +
Sbjct: 541 ESWFSDNLNRAHLDYFYWILAALAALEVAVFVYIAKRYVYKNK 583
>dbj|BAB86548.1| contains EST AU065194(E60541)~similar to oligopeptide transporter
[Oryza sativa (japonica cultivar-group)]
gi|20146496|dbj|BAB89275.1| P0491F11.10 [Oryza sativa
(japonica cultivar-group)]
Length = 548
Score = 50.4 bits (119), Expect = 2e-05
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = -1
Query: 651 SWIGDNLNDCHLDYYYGFLLVLSSLNLLAFLWASSRYIYKRESVRVK 511
SW DNLN HLDY+Y L VLS L L A+L S Y++K++ + V+
Sbjct: 502 SWFSDNLNRGHLDYFYWLLAVLSVLGLAAYLHFSRVYVHKKKGISVQ 548
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,849,611
Number of Sequences: 1393205
Number of extensions: 12013066
Number of successful extensions: 25400
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 24720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25393
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
