Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005483A_C01 KMC005483A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12970 hypothetical protein T6H20.190 - Arabidopsis thalian... 116 2e-25
ref|ZP_00125993.1| hypothetical protein [Pseudomonas syringae pv... 40 0.028
ref|NP_563718.1| expressed protein; protein id: At1g04850.1, sup... 36 0.30
sp|P45699|GUNK_FUSOX Putative endoglucanase type K precursor (En... 36 0.40
gb|AAM55492.1| allergenic-related protein Pt2L4 [Manihot esculenta] 34 1.2
>pir||T12970 hypothetical protein T6H20.190 - Arabidopsis thaliana
gi|5541681|emb|CAB51187.1| putative protein [Arabidopsis
thaliana]
Length = 510
Score = 116 bits (291), Expect = 2e-25
Identities = 61/105 (58%), Positives = 77/105 (73%)
Frame = -1
Query: 577 SVEDLLSKAKDFGAGISWQKISSQIATSVPKPDEDEKPKVQVATVRGQAQARSLTPNQAV 398
+V+ L +KAKD +G+SW K+ SQ AT++ + E PKVQVATVRGQA+AR+L P +AV
Sbjct: 410 TVDGLFNKAKDISSGLSWNKLGSQFATAIQ--NASETPKVQVATVRGQAKARNLPPKKAV 467
Query: 397 VKPTSPRSVATKPKEENRKPAETAKEVRKVFGGLFKPETIYLDDD 263
VK A+KPKEE +P + KEVRKVFGGLFK ETIY+DDD
Sbjct: 468 VKQRPSSPFASKPKEE--RPKKPEKEVRKVFGGLFKQETIYIDDD 510
>ref|ZP_00125993.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 269
Score = 39.7 bits (91), Expect = 0.028
Identities = 23/72 (31%), Positives = 32/72 (43%)
Frame = -1
Query: 490 PKPDEDEKPKVQVATVRGQAQARSLTPNQAVVKPTSPRSVATKPKEENRKPAETAKEVRK 311
PKPDE KPK Q T + A+ + P +V PT + A P+ P T + +
Sbjct: 123 PKPDELPKPKAQPRTAPSKPVAKPVAPAPSVAAPTPAPAAAPAPRPAPAAPQTTTAPIGR 182
Query: 310 VFGGLFKPETIY 275
G L P +Y
Sbjct: 183 A-GYLNNPPPVY 193
>ref|NP_563718.1| expressed protein; protein id: At1g04850.1, supported by cDNA:
6672., supported by cDNA: gi_17065065 [Arabidopsis
thaliana] gi|25406815|pir||G86181 hypothetical protein
[imported] - Arabidopsis thaliana
gi|7211981|gb|AAF40452.1|AC004809_10 ESTs gb|N65605,
gb|N38087, gb|T20485, gb|T13726, gb|N38339, gb|F15440
and gb|N97201 come from this gene. [Arabidopsis
thaliana] gi|17065066|gb|AAL32687.1| Unknown protein
[Arabidopsis thaliana] gi|21594053|gb|AAM65971.1|
unknown [Arabidopsis thaliana]
gi|23197878|gb|AAN15466.1| Unknown protein [Arabidopsis
thaliana]
Length = 413
Score = 36.2 bits (82), Expect = 0.30
Identities = 24/84 (28%), Positives = 38/84 (44%)
Frame = -1
Query: 559 SKAKDFGAGISWQKISSQIATSVPKPDEDEKPKVQVATVRGQAQARSLTPNQAVVKPTSP 380
++A + S + + + PD DE PKV + G A+ +LTP + +K
Sbjct: 130 TRALHYSGNASLEAAVNWVVEHENDPDVDEMPKVPSNSNVGPAKP-ALTPEEVKLKAQEL 188
Query: 379 RSVATKPKEENRKPAETAKEVRKV 308
R A K KEE K E +E ++
Sbjct: 189 RERARKKKEEEEKRMEREREKERI 212
>sp|P45699|GUNK_FUSOX Putative endoglucanase type K precursor (Endo-1,4-beta-glucanase)
(Cellulase) gi|520823|gb|AAA65589.1| K-family cellulase
homologue
Length = 376
Score = 35.8 bits (81), Expect = 0.40
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 2/71 (2%)
Frame = -1
Query: 529 SWQKISSQIATSVPKPDEDEKPKVQVATVRGQAQARSLTP--NQAVVKPTSPRSVATKPK 356
S +K +S A + P+ +D P VQ ++ + AQ P KP + + ATKP
Sbjct: 244 SAKKTTSAAAAAQPQKTKDSAPVVQKSSTKPAAQPEPTKPADKPQTDKPVATKPAATKPA 303
Query: 355 EENRKPAETAK 323
+ KP T K
Sbjct: 304 QPVNKPKTTQK 314
>gb|AAM55492.1| allergenic-related protein Pt2L4 [Manihot esculenta]
Length = 177
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/59 (30%), Positives = 32/59 (53%)
Frame = -1
Query: 484 PDEDEKPKVQVATVRGQAQARSLTPNQAVVKPTSPRSVATKPKEENRKPAETAKEVRKV 308
P+E +V+V+ + + A ++ P K P +V+ +PKE + PAE A E ++V
Sbjct: 14 PEEKPAEEVKVSEIVTEEAAPAVEPVAEEPKEAEPVAVSEEPKEADDAPAEVAVETKEV 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,791,836
Number of Sequences: 1393205
Number of extensions: 11207066
Number of successful extensions: 37022
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 34900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36904
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
