Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005474A_C01 KMC005474A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC04249.1| PPF-1 protein [Pisum sativum] 138 4e-32
pir||T06476 ppf-1 protein - garden pea gi|2231046|emb|CAA73179.1... 138 4e-32
ref|NP_180446.1| chloroplast membrane protein (ALBINO3)(ALB3)(OX... 82 5e-15
dbj|BAB03614.1| putative ppf-1 protein [Oryza sativa (japonica c... 81 8e-15
gb|AAM64642.1| chloroplast membrane protein ALBINO3 [Arabidopsis... 80 2e-14
>emb|CAC04249.1| PPF-1 protein [Pisum sativum]
Length = 442
Score = 138 bits (348), Expect = 4e-32
Identities = 77/101 (76%), Positives = 87/101 (85%), Gaps = 2/101 (1%)
Frame = -3
Query: 581 VDENAGGIITAGRAKRSASQPARAGERFRQSKEEEKNKKLMKALPGEELQPL--ASASDD 408
V+ENAGGIITAG+AKRSAS+P + GERFRQ KEEEK KKL+KALP EE+QPL ASAS+D
Sbjct: 340 VNENAGGIITAGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVEEVQPLASASASND 399
Query: 407 GSDVESDNKGQEDGEEAYASKVGEEVQSFSRERRSKRSKRK 285
GSDVE +NK QE EE+ SKV +EVQSFSRERRSKRSKRK
Sbjct: 400 GSDVE-NNKEQEVTEESNTSKVSQEVQSFSRERRSKRSKRK 439
>pir||T06476 ppf-1 protein - garden pea gi|2231046|emb|CAA73179.1| PPF-1 protein
[Pisum sativum]
Length = 442
Score = 138 bits (348), Expect = 4e-32
Identities = 77/101 (76%), Positives = 87/101 (85%), Gaps = 2/101 (1%)
Frame = -3
Query: 581 VDENAGGIITAGRAKRSASQPARAGERFRQSKEEEKNKKLMKALPGEELQPL--ASASDD 408
V+ENAGGIITAG+AKRSAS+P + GERFRQ KEEEK KKL+KALP EE+QPL ASAS+D
Sbjct: 340 VNENAGGIITAGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVEEVQPLASASASND 399
Query: 407 GSDVESDNKGQEDGEEAYASKVGEEVQSFSRERRSKRSKRK 285
GSDVE +NK QE EE+ SKV +EVQSFSRERRSKRSKRK
Sbjct: 400 GSDVE-NNKEQEVTEESNTSKVSQEVQSFSRERRSKRSKRK 439
>ref|NP_180446.1| chloroplast membrane protein (ALBINO3)(ALB3)(OXA1p); protein id:
At2g28800.1, supported by cDNA: 31457., supported by
cDNA: gi_2209331 [Arabidopsis thaliana]
gi|25408012|pir||A84689 chloroplast membrane protein
(ALBINO3) [imported] - Arabidopsis thaliana
gi|2209332|gb|AAB61458.1| chloroplast membrane protein
ALBINO3 [Arabidopsis thaliana] gi|3927828|gb|AAC79585.1|
chloroplast membrane protein (ALBINO3) [Arabidopsis
thaliana] gi|27311661|gb|AAO00796.1| chloroplast
membrane protein (ALBINO3) [Arabidopsis thaliana]
Length = 462
Score = 82.0 bits (201), Expect = 5e-15
Identities = 50/102 (49%), Positives = 64/102 (62%)
Frame = -3
Query: 581 VDENAGGIITAGRAKRSASQPARAGERFRQSKEEEKNKKLMKALPGEELQPLASASDDGS 402
+DENA II+AGRAKRS +QP AGERFRQ KE+EK K KA+ + ++ L S S
Sbjct: 362 MDENASKIISAGRAKRSIAQPDDAGERFRQLKEQEKRSKKNKAVAKDTVE-LVEESQSES 420
Query: 401 DVESDNKGQEDGEEAYASKVGEEVQSFSRERRSKRSKRKRAV 276
+ SD++ +E E A AS + +RRSKRSKRKR V
Sbjct: 421 EEGSDDEEEEAREGALASSTTSKPLPEVGQRRSKRSKRKRTV 462
>dbj|BAB03614.1| putative ppf-1 protein [Oryza sativa (japonica cultivar-group)]
Length = 409
Score = 81.3 bits (199), Expect = 8e-15
Identities = 46/103 (44%), Positives = 65/103 (62%)
Frame = -3
Query: 584 VVDENAGGIITAGRAKRSASQPARAGERFRQSKEEEKNKKLMKALPGEELQPLASASDDG 405
VV++ GIITAGRAKR+++QPA+ GERF+Q KEEE +K KAL + AS S+D
Sbjct: 298 VVNQGGSGIITAGRAKRTSAQPAQPGERFKQLKEEESKRKGNKALAAGDSDLSASTSEDE 357
Query: 404 SDVESDNKGQEDGEEAYASKVGEEVQSFSRERRSKRSKRKRAV 276
+ + Q EE Y S +++ ++S ++ KRSKRKR V
Sbjct: 358 ESDDETTEEQGGPEERYNSSSNKKLPNYS-GKKGKRSKRKRMV 399
>gb|AAM64642.1| chloroplast membrane protein ALBINO3 [Arabidopsis thaliana]
Length = 462
Score = 79.7 bits (195), Expect = 2e-14
Identities = 49/102 (48%), Positives = 63/102 (61%)
Frame = -3
Query: 581 VDENAGGIITAGRAKRSASQPARAGERFRQSKEEEKNKKLMKALPGEELQPLASASDDGS 402
+DENA II+AGRAKRS +QP AGE FRQ KE+EK K KA+ + ++ L S S
Sbjct: 362 MDENASKIISAGRAKRSIAQPDDAGETFRQLKEQEKRSKKNKAVAKDTVE-LVEESQSES 420
Query: 401 DVESDNKGQEDGEEAYASKVGEEVQSFSRERRSKRSKRKRAV 276
+ SD++ +E E A AS + +RRSKRSKRKR V
Sbjct: 421 EEGSDDEEEEAREGALASSTTSKPLPEVGQRRSKRSKRKRTV 462
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,913,824
Number of Sequences: 1393205
Number of extensions: 8860636
Number of successful extensions: 30162
Number of sequences better than 10.0: 200
Number of HSP's better than 10.0 without gapping: 26981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29483
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
