Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005466A_C01 KMC005466A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198787.1| putative protein; protein id: At5g39710.1 [Arab... 54 2e-06
ref|NP_199839.1| putative protein; protein id: At5g50280.1 [Arab... 37 0.17
gb|EAA31369.1| hypothetical protein [Neurospora crassa] 26 3.1
ref|NP_704628.1| transporter, putative [Plasmodium falciparum 3D... 33 4.1
gb|ZP_00099888.1| hypothetical protein [Desulfitobacterium hafni... 32 5.4
>ref|NP_198787.1| putative protein; protein id: At5g39710.1 [Arabidopsis thaliana]
Length = 747
Score = 53.9 bits (128), Expect = 2e-06
Identities = 29/65 (44%), Positives = 43/65 (65%)
Frame = -3
Query: 634 LIWALYHGGRYNKMIWVIQNTLRSCNLNDSEQLKILDEIDRERCIIYALLDVLAEKAMDG 455
L+ AL+ G+ N++ VI + LRSC L+++EQ K+L EI+ + +LDVLAE A DG
Sbjct: 681 LVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDG 740
Query: 454 LLLDG 440
L +G
Sbjct: 741 FLPNG 745
>ref|NP_199839.1| putative protein; protein id: At5g50280.1 [Arabidopsis thaliana]
gi|9759030|dbj|BAB09399.1| contains similarity to
salt-inducible protein~gene_id:K6A12.14 [Arabidopsis
thaliana]
Length = 723
Score = 37.4 bits (85), Expect = 0.17
Identities = 18/39 (46%), Positives = 25/39 (63%), Gaps = 3/39 (7%)
Frame = +1
Query: 280 LEILGKEHRLVCCLLFFKWMRSHEP---SPRACTVLFPL 387
L ++G+ + CL F++WM EP SPRAC+VLF L
Sbjct: 209 LVMMGESGFVKSCLYFYEWMSLQEPSLASPRACSVLFTL 247
>gb|EAA31369.1| hypothetical protein [Neurospora crassa]
Length = 183
Score = 26.2 bits (56), Expect(2) = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 320 CYSLSG*GHMNHLLGHVLCCFHCGGS 397
CYS G GHM+ + C++CG S
Sbjct: 124 CYSCGGIGHMSRDCVNGSKCYNCGES 149
Score = 25.8 bits (55), Expect(2) = 3.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 213 CGEIVQLARNLQQHLAQYGGRGSGNTREGAPSG 311
CGE+ +ARN + A YGG G N+ G G
Sbjct: 87 CGEVGHIARNCSKGGASYGG-GYQNSGYGGGFG 118
>ref|NP_704628.1| transporter, putative [Plasmodium falciparum 3D7]
gi|23504988|emb|CAD51771.1| transporter, putative
[Plasmodium falciparum 3D7]
Length = 590
Score = 32.7 bits (73), Expect = 4.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -2
Query: 443 WWKVFICFSVVSWPLHSHHNGNNTVHARGDGSCDLIHLKNNKQHTRRCSF 294
+++ F +S + W + H+N NN + + + + +H K N +T CS+
Sbjct: 434 FYERFKKYSSIIWNNNIHNNHNNNYYYHNNSNNNFVHKKENHLNTSSCSY 483
>gb|ZP_00099888.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 295
Score = 32.3 bits (72), Expect = 5.4
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -3
Query: 613 GGRYNKMIWVIQNTLRSC---NLNDSEQLKILDEIDRERCIIYALLDVLAEKAMDGLLLD 443
GGR +K L C N++++ +L ++ ++ +I ++D +AE A GL
Sbjct: 175 GGRISKTAGFFGTLLGVCPLLNMDNNGKLIPRKKVRGKKRVITEIVDRMAEHAQGGLSY- 233
Query: 442 GGKCSYASASCH 407
GGKC ++A C+
Sbjct: 234 GGKCYISNAGCY 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,195,123
Number of Sequences: 1393205
Number of extensions: 13579147
Number of successful extensions: 38238
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 36485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38213
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
