Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005465A_C01 KMC005465A_c01
(739 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178092.1| hypothetical protein; protein id: At1g79740.1 [... 130 2e-29
dbj|BAA94530.2| unnamed protein product [Oryza sativa (japonica ... 125 5e-28
ref|NP_680299.1| hypothetical protein; protein id: At5g33406.1 [... 70 7e-15
ref|NP_188861.1| hypothetical protein; protein id: At3g22220.1 [... 60 3e-13
gb|AAO18451.1| hypothetical protein [Oryza sativa (japonica cult... 64 5e-13
>ref|NP_178092.1| hypothetical protein; protein id: At1g79740.1 [Arabidopsis
thaliana] gi|25406602|pir||D96828 hypothetical protein
F19K16.28 [imported] - Arabidopsis thaliana
gi|7715599|gb|AAF68117.1|AC010793_12 F20B17.17
[Arabidopsis thaliana]
gi|12324578|gb|AAG52239.1|AC011717_7 hypothetical
protein; 97951-99813 [Arabidopsis thaliana]
Length = 518
Score = 130 bits (327), Expect = 2e-29
Identities = 79/164 (48%), Positives = 97/164 (58%), Gaps = 9/164 (5%)
Frame = -3
Query: 737 KAHGMFGCSLAKEARSTVAPWLWWEQYGDSAPGLQRVAIRILSQVCSTLSFQRQWSTFRQ 558
+A GMFGC+LA EAR +V+P LWWEQ+GDSAP LQRVAIRILSQVCS + +RQWSTF+Q
Sbjct: 366 RAKGMFGCNLAMEARDSVSPGLWWEQFGDSAPVLQRVAIRILSQVCSGYNLERQWSTFQQ 425
Query: 557 IHSEKRNKIDREHIERPCL----YKLQSQVS*ADECKVFRS*SASV**H*HDF*VGGGE* 390
+H E+RNKIDRE + + KL ++ + D +
Sbjct: 426 MHWERRNKIDREILNKLAYVNQNLKLGRMITLETDPIAL-----------EDIDMMSEWV 474
Query: 389 NFKSNPVAGS----FWSTLDGNDLNTRQFGSSIFGAND-PIFGL 273
NP F + LDG DLNTRQFG +IF AND IFGL
Sbjct: 475 EEAENPSPAQWLDRFGTALDGGDLNTRQFGGAIFSANDHNIFGL 518
Score = 68.2 bits (165), Expect = 1e-10
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = -1
Query: 517 LNDLVYINYNLKLARQMNAKSLEVDLLQFDDIDMTSEWVEENETSSPTQWLDRFG 353
LN L Y+N NLKL R + +LE D + +DIDM SEWVEE E SP QWLDRFG
Sbjct: 439 LNKLAYVNQNLKLGRMI---TLETDPIALEDIDMMSEWVEEAENPSPAQWLDRFG 490
>dbj|BAA94530.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 521
Score = 125 bits (315), Expect = 5e-28
Identities = 74/157 (47%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Frame = -3
Query: 737 KAHGMFGCSLAKEARSTVAPWLWWEQYGDSAPGLQRVAIRILSQVCSTLSFQRQWSTFRQ 558
KA GMFG ++AKEAR+ +P +WWEQYGDSAP LQ A+RI+SQVCSTL+FQR WS +
Sbjct: 368 KAQGMFGSNIAKEARNNTSPGMWWEQYGDSAPSLQHAAVRIVSQVCSTLTFQRDWSIIVR 427
Query: 557 IHSEKRNKIDREHIERPCLYKLQSQVS*ADECKVFRS*SASV**H*HDF*VGGGE*NFKS 378
HSEKRNK+D+E + + + K+ + + D E +
Sbjct: 428 NHSEKRNKLDKEALADQAYVHYNFMLH--SDSKMKKGDGDPIALDAIDMTSPWVEDSDSP 485
Query: 377 NPV--AGSFWSTLDGNDLNTRQFGSSIFGANDPIFGL 273
N F S LDG DLNTRQFG SIFG ND +FGL
Sbjct: 486 NLAQWLDRFPSALDG-DLNTRQFGGSIFGTNDTLFGL 521
Score = 52.0 bits (123), Expect = 9e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = -1
Query: 535 RLIENTLNDLVYINYNLKLARQMNAKSLEVDLLQFDDIDMTSEWVEENETSSPTQWLDRF 356
+L + L D Y++YN L K + D + D IDMTS WVE++++ + QWLDRF
Sbjct: 435 KLDKEALADQAYVHYNFMLHSDSKMKKGDGDPIALDAIDMTSPWVEDSDSPNLAQWLDRF 494
>ref|NP_680299.1| hypothetical protein; protein id: At5g33406.1 [Arabidopsis
thaliana]
Length = 485
Score = 69.7 bits (169), Expect(2) = 7e-15
Identities = 28/69 (40%), Positives = 43/69 (61%)
Frame = -3
Query: 737 KAHGMFGCSLAKEARSTVAPWLWWEQYGDSAPGLQRVAIRILSQVCSTLSFQRQWSTFRQ 558
KA G+FG +A R+ ++P WW YG S P LQ AI++LS CS +R W F+
Sbjct: 195 KATGLFGIPMAIRLRTKMSPAEWWSAYGSSTPNLQNFAIKVLSLTCSATGCERNWGVFQL 254
Query: 557 IHSEKRNKI 531
+H+++RN++
Sbjct: 255 LHTKRRNRL 263
Score = 32.7 bits (73), Expect(2) = 7e-15
Identities = 18/57 (31%), Positives = 32/57 (55%), Gaps = 2/57 (3%)
Frame = -1
Query: 535 RLIENTLNDLVYINYNLKLARQMNAKSLEVDLLQFDDIDMTSEWV--EENETSSPTQ 371
RL + LND++++ YN L R+ ++ D + ++ID +EW+ E SS T+
Sbjct: 262 RLTQCRLNDMIFVKYNRALQRRYK-RNDTFDPILLNEIDQCNEWLTGRMEENSSDTE 317
>ref|NP_188861.1| hypothetical protein; protein id: At3g22220.1 [Arabidopsis
thaliana]
Length = 759
Score = 60.1 bits (144), Expect(2) = 3e-13
Identities = 33/74 (44%), Positives = 46/74 (61%), Gaps = 1/74 (1%)
Frame = -3
Query: 734 AHGMFGCSLAKEARSTVAPWLWWEQYGDSAPGLQRVAIRILSQVC-STLSFQRQWSTFRQ 558
A G+FG +LA AR T+ P WW YG+S L R AIRILSQ C S++ R ++ Q
Sbjct: 584 AVGIFGRNLAIRARDTMLPAEWWSTYGESCLNLSRFAIRILSQTCSSSIGSVRNLTSISQ 643
Query: 557 IHSEKRNKIDREHI 516
I+ E +N I+R+ +
Sbjct: 644 IY-ESKNSIERQRL 656
Score = 37.0 bits (84), Expect(2) = 3e-13
Identities = 15/43 (34%), Positives = 27/43 (61%)
Frame = -1
Query: 517 LNDLVYINYNLKLARQMNAKSLEVDLLQFDDIDMTSEWVEENE 389
LNDLV++ YN++L R ++ VD L ++++ +WV N+
Sbjct: 656 LNDLVFVQYNMRLRRIESSGDDTVDPLSHSNMEVLEDWVSRNQ 698
>gb|AAO18451.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 63.5 bits (153), Expect(2) = 5e-13
Identities = 30/74 (40%), Positives = 43/74 (57%)
Frame = -3
Query: 737 KAHGMFGCSLAKEARSTVAPWLWWEQYGDSAPGLQRVAIRILSQVCSTLSFQRQWSTFRQ 558
+A G F +A AR T+ P WW YG + P L R+A+RILSQ CS R+ +F Q
Sbjct: 607 EAAGDFRRQMAIRARHTLPPAEWWYTYGGACPNLTRLAVRILSQTCSAKGCDRRHISFEQ 666
Query: 557 IHSEKRNKIDREHI 516
IH ++ N +R+ +
Sbjct: 667 IHDQRMNLFERQRM 680
Score = 32.7 bits (73), Expect(2) = 5e-13
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 517 LNDLVYINYNLKLARQMNAKSLEVDLLQFDDIDMTSEWV 401
++ L ++ YNL+L + K+ D + D+ID+ +WV
Sbjct: 680 MHHLTFVQYNLRLQHRQQHKTKAFDPVSVDNIDIVDDWV 718
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 633,450,412
Number of Sequences: 1393205
Number of extensions: 13418804
Number of successful extensions: 32709
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 31251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32693
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
