Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005448A_C01 KMC005448A_c01
(433 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_655495.1| hypothetical protein predicted by GeneMark [Bac... 36 0.13
sp|Q64662|P53_SPEBE Cellular tumor antigen p53 (Tumor suppressor... 34 0.36
ref|NP_081378.1| endothelial cell-selective adhesion molecule; R... 33 1.1
sp|O36006|P53_MARMO Cellular tumor antigen p53 (Tumor suppressor... 33 1.1
ref|NP_284654.1| putative phosphoglucomutase/phosphomannomutase ... 32 1.4
>ref|NP_655495.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012]
Length = 5017
Score = 35.8 bits (81), Expect = 0.13
Identities = 22/89 (24%), Positives = 43/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 158 STFNFNSNSSSVVDGGPNSNCTLPRRV---GIMKPSSEKWKQLSVSLLSFRDRCAIDARL 328
+T NF +NS +++G P +P V GI P + + V +++ + I +
Sbjct: 3290 NTGNFPANSVLLINGVPEGALFVPNSVTLNGISLPDASPTLGIPVGIIAPGNSATITFQF 3349
Query: 329 LSEKINSRQAFINETIKNLENLSNPNLPP 415
L+ I + A IN+ + + + +P+ PP
Sbjct: 3350 LANSIPPQGAIINQALTSYTYIVDPSQPP 3378
>sp|Q64662|P53_SPEBE Cellular tumor antigen p53 (Tumor suppressor p53)
gi|1165312|gb|AAA85628.1| p53
Length = 314
Score = 34.3 bits (77), Expect = 0.36
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 120 G*EEALFCFAASVRPSTSTPTPAASSMAAPIPTVPFP 230
G +EAL AA P+ PTPAAS++AAP P + +P
Sbjct: 37 GPDEALQMSAA---PAPKAPTPAASTLAAPTPAISWP 70
>ref|NP_081378.1| endothelial cell-selective adhesion molecule; RIKEN cDNA 2310008D05
gene [Mus musculus] gi|13991773|gb|AAK51504.1|AF361882_1
endothelial cell-selective adhesion molecule [Mus
musculus] gi|29165726|gb|AAH49249.1| endothelial
cell-selective adhesion molecule [Mus musculus]
Length = 394
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/30 (53%), Positives = 18/30 (59%)
Frame = +3
Query: 147 AASVRPSTSTPTPAASSMAAPIPTVPFPDE 236
AA RP T TPTP+ SS A P +P DE
Sbjct: 327 AAPPRPGTFTPTPSVSSQALSSPRLPRVDE 356
>sp|O36006|P53_MARMO Cellular tumor antigen p53 (Tumor suppressor p53)
gi|2440123|emb|CAA04478.1| tumor suppressor [Marmota
monax]
Length = 391
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/37 (48%), Positives = 23/37 (61%)
Frame = +3
Query: 120 G*EEALFCFAASVRPSTSTPTPAASSMAAPIPTVPFP 230
G +EAL AA P+ PTPAAS++AAP P +P
Sbjct: 57 GPDEALQMSAA---PAPKAPTPAASTLAAPSPATSWP 90
>ref|NP_284654.1| putative phosphoglucomutase/phosphomannomutase [Neisseria
meningitidis Z2491] gi|11279444|pir||C81823 probable
phosphoglucomutase/phosphomannomutase NMA1949 [imported]
- Neisseria meningitidis (strain Z2491 serogroup A)
gi|7380581|emb|CAB85169.1| putative
phosphoglucomutase/phosphomannomutase [Neisseria
meningitidis Z2491]
Length = 444
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = -2
Query: 306 LSLKLNKLTDNCFHFSDEGFIIPTRRGRVQLELGPPSTTLLELELKLKVEQKRRSRKGLL 127
+S N +DN F EG G + +ELE++ K++++ +++
Sbjct: 101 ISASHNAYSDNGIKFFAEG--------------GVKLSDEIELEIEAKIDEEMKTQPSAR 146
Query: 126 LSRKRRSAIAESRFFFFCEN 67
L R RR + A+ R+ FC++
Sbjct: 147 LGRARRISGADDRYIEFCKS 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,000,331
Number of Sequences: 1393205
Number of extensions: 7492858
Number of successful extensions: 33572
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 30229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33354
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
