Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005430A_C01 KMC005430A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_008518.1|ND5_15045 NADH dehydrogenase subunit 5 [Rhipicep... 34 0.96
ref|NP_559461.1| phenylalanyl-tRNA synthetase beta subunit [Pyro... 31 8.1
>ref|NP_008518.1|ND5_15045 NADH dehydrogenase subunit 5 [Rhipicephalus sanguineus]
gi|8473901|sp|Q9ZYM7|NU5M_RHISA NADH-ubiquinone
oxidoreductase chain 5 gi|7432488|pir||T11161 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5
[similarity] - hardbacked tick (Rhipicephalus
sanguineus) mitochondrion gi|4164565|gb|AAD05525.1| NADH
dehydrogenase 5 [Rhipicephalus sanguineus]
Length = 552
Score = 34.3 bits (77), Expect = 0.96
Identities = 13/44 (29%), Positives = 23/44 (51%)
Frame = -1
Query: 431 LFASFFLSTFYYSIFSAQSYNFLNYMKHPFYFRMMFCWPPCEYS 300
+F F TFY++IF YN ++ + + F ++ W C +S
Sbjct: 15 VFLYMFFMTFYFNIFFIFEYNLMSILSFEYKFYILLDWMSCMFS 58
>ref|NP_559461.1| phenylalanyl-tRNA synthetase beta subunit [Pyrobaculum aerophilum]
gi|24418716|sp|Q8ZWQ7|SYFB_PYRAE Phenylalanyl-tRNA
synthetase beta chain (Phenylalanine--tRNA ligase beta
chain) (PheRS) gi|18160278|gb|AAL63643.1|
phenylalanyl-tRNA synthetase beta subunit [Pyrobaculum
aerophilum]
Length = 515
Score = 31.2 bits (69), Expect = 8.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +1
Query: 10 LNNYITIATAMLNITKSCSKINPVGSL-----CSLLTAGISKTSCLEHLEKHILVLG 165
LNNY+ A+ + NP+ L CS++T IS S L+ E I +G
Sbjct: 367 LNNYVLTDEAVAEVCSPARVANPISELYTTIRCSIITQLISAASALKRRETKIFEVG 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,972,201
Number of Sequences: 1393205
Number of extensions: 9089922
Number of successful extensions: 25536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25521
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
