Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005428A_C01 KMC005428A_c01
(840 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC34500.1| putative protein [Arabidopsis thaliana] gi|22531... 215 6e-55
ref|NP_680193.1| unknown protein; protein id: At5g22070.1 [Arabi... 215 6e-55
ref|NP_190774.1| putative protein; protein id: At3g52060.1, supp... 212 5e-54
ref|NP_194956.1| putative protein; protein id: At4g32290.1 [Arab... 162 7e-39
ref|NP_197915.1| putative protein; protein id: At5g25330.1 [Arab... 149 7e-35
>emb|CAC34500.1| putative protein [Arabidopsis thaliana] gi|22531074|gb|AAM97041.1|
unknown protein [Arabidopsis thaliana]
gi|23197924|gb|AAN15489.1| unknown protein [Arabidopsis
thaliana] gi|26452044|dbj|BAC43112.1| unknown protein
[Arabidopsis thaliana]
Length = 362
Score = 215 bits (548), Expect = 6e-55
Identities = 96/140 (68%), Positives = 115/140 (81%)
Frame = -1
Query: 840 ARGENVMLPEVTFDAFRVGSQFFVLTRRHAVVVLRDRRLWRKFRLPCLTEEPCYPEEHYF 661
ARG M+PEV F+ FRVGSQFFV+TRRHA++ ++DR LWRKF+LPC + CYPEEHYF
Sbjct: 223 ARGRYAMMPEVPFEKFRVGSQFFVMTRRHALLTIKDRILWRKFKLPCYRSDECYPEEHYF 282
Query: 660 PTLLSMEDPNGCTGFTLTRVNWTGCWDGHPHLYTPPEVSPELVRRLRESNSSYSYLFARK 481
PTLL+M+DP+GCTG+TLTRVNWTG GHP+ Y P EV PEL++RLR SN S SY FARK
Sbjct: 283 PTLLNMKDPDGCTGYTLTRVNWTGTVKGHPYTYKPKEVVPELIQRLRRSNHSSSYFFARK 342
Query: 480 FSPECLTPLMDIADDVIFRD 421
F+P+CL PL+ IAD VIFRD
Sbjct: 343 FTPDCLKPLLAIADSVIFRD 362
>ref|NP_680193.1| unknown protein; protein id: At5g22070.1 [Arabidopsis thaliana]
Length = 359
Score = 215 bits (548), Expect = 6e-55
Identities = 96/140 (68%), Positives = 115/140 (81%)
Frame = -1
Query: 840 ARGENVMLPEVTFDAFRVGSQFFVLTRRHAVVVLRDRRLWRKFRLPCLTEEPCYPEEHYF 661
ARG M+PEV F+ FRVGSQFFV+TRRHA++ ++DR LWRKF+LPC + CYPEEHYF
Sbjct: 220 ARGRYAMMPEVPFEKFRVGSQFFVMTRRHALLTIKDRILWRKFKLPCYRSDECYPEEHYF 279
Query: 660 PTLLSMEDPNGCTGFTLTRVNWTGCWDGHPHLYTPPEVSPELVRRLRESNSSYSYLFARK 481
PTLL+M+DP+GCTG+TLTRVNWTG GHP+ Y P EV PEL++RLR SN S SY FARK
Sbjct: 280 PTLLNMKDPDGCTGYTLTRVNWTGTVKGHPYTYKPKEVVPELIQRLRRSNHSSSYFFARK 339
Query: 480 FSPECLTPLMDIADDVIFRD 421
F+P+CL PL+ IAD VIFRD
Sbjct: 340 FTPDCLKPLLAIADSVIFRD 359
>ref|NP_190774.1| putative protein; protein id: At3g52060.1, supported by cDNA:
gi_13430781, supported by cDNA: gi_13877702, supported
by cDNA: gi_15293266 [Arabidopsis thaliana]
gi|11281887|pir||T49085 hypothetical protein F4F15.170 -
Arabidopsis thaliana gi|4678935|emb|CAB41326.1| putative
protein [Arabidopsis thaliana]
gi|13430782|gb|AAK26013.1|AF360303_1 unknown protein
[Arabidopsis thaliana]
gi|13877703|gb|AAK43929.1|AF370610_1 putative protein
[Arabidopsis thaliana] gi|15293267|gb|AAK93744.1|
unknown protein [Arabidopsis thaliana]
gi|27311805|gb|AAO00868.1| Unknown protein [Arabidopsis
thaliana]
Length = 346
Score = 212 bits (540), Expect = 5e-54
Identities = 95/140 (67%), Positives = 114/140 (80%)
Frame = -1
Query: 840 ARGENVMLPEVTFDAFRVGSQFFVLTRRHAVVVLRDRRLWRKFRLPCLTEEPCYPEEHYF 661
ARG++ MLPE+ + FRVGSQFFVL +RHA++V+++R+LWRKF+LPCL E CYPEEHYF
Sbjct: 207 ARGDDAMLPEIQYQDFRVGSQFFVLAKRHALMVIKERKLWRKFKLPCLDVESCYPEEHYF 266
Query: 660 PTLLSMEDPNGCTGFTLTRVNWTGCWDGHPHLYTPPEVSPELVRRLRESNSSYSYLFARK 481
PTLLS+EDP GC+ FTLTRVNWTG GHPH Y E+SP+L+ LR SNSS Y FARK
Sbjct: 267 PTLLSLEDPQGCSHFTLTRVNWTGSVGGHPHTYDASEISPQLIHSLRRSNSSLDYFFARK 326
Query: 480 FSPECLTPLMDIADDVIFRD 421
F+PE L PLM+IAD VIFRD
Sbjct: 327 FTPESLQPLMEIADAVIFRD 346
>ref|NP_194956.1| putative protein; protein id: At4g32290.1 [Arabidopsis thaliana]
gi|7485357|pir||T05399 hypothetical protein F10M6.70 -
Arabidopsis thaliana gi|2864614|emb|CAA16961.1| putative
protein [Arabidopsis thaliana]
gi|7270133|emb|CAB79947.1| putative protein [Arabidopsis
thaliana]
Length = 384
Score = 162 bits (409), Expect = 7e-39
Identities = 82/157 (52%), Positives = 99/157 (62%), Gaps = 17/157 (10%)
Frame = -1
Query: 840 ARGENVMLPEVTFDAFRVGSQFFVLTRRHAVVVLRDRRLWRKFRLPCLTEEPCYPEEHYF 661
A G + MLPEV + FR+GSQF+VL RRHA VV RDRR+W KF C+ E+ CYPEE YF
Sbjct: 223 AIGRHAMLPEVKLEEFRIGSQFWVLKRRHARVVARDRRIWVKFNQTCVREDSCYPEESYF 282
Query: 660 PTLLSMEDPNGCTGFTLTRVNWTGCWDGHPHLYTPPEVSPELVRRLRESNSSYS------ 499
PTLL+M DP GC TLT V+WT GHP +Y P EV PELV RLR++ Y
Sbjct: 283 PTLLNMRDPRGCVPATLTHVDWTVNDGGHPRMYEPEEVVPELVLRLRKTRPRYGEDGING 342
Query: 498 -----------YLFARKFSPECLTPLMDIADDVIFRD 421
+LFARKFSP+ L PL+ +A V+F D
Sbjct: 343 SEWSKVERMDPFLFARKFSPQALEPLLGMARTVLFND 379
>ref|NP_197915.1| putative protein; protein id: At5g25330.1 [Arabidopsis thaliana]
Length = 366
Score = 149 bits (375), Expect = 7e-35
Identities = 73/149 (48%), Positives = 93/149 (61%), Gaps = 9/149 (6%)
Frame = -1
Query: 840 ARGENVMLPEVTFDAFRVGSQFFVLTRRHAVVVLRDRRLWRKFRLPCLTEEPCYPEEHYF 661
ARG M PEV + FR+GSQF+ LTR HA++V+ D +W KF C+ E+ CYPEEHYF
Sbjct: 214 ARGPYAMFPEVPPEEFRIGSQFWTLTRAHALMVVSDVEIWSKFNKSCVREDICYPEEHYF 273
Query: 660 PTLLSMEDPNGCTGFTLTRVNWTGCWDGHPHLYTPPEVSPELVRRLRESNSSYS------ 499
PTLL+M DP GC T+T V+W+ GHP Y P EV EL+++LR + Y
Sbjct: 274 PTLLNMRDPQGCVSATVTHVDWSVNDHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTR 333
Query: 498 ---YLFARKFSPECLTPLMDIADDVIFRD 421
+LFARKFSP + LM+I VIF D
Sbjct: 334 KDPFLFARKFSPAGINQLMNITRSVIFND 362
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 729,640,811
Number of Sequences: 1393205
Number of extensions: 17560164
Number of successful extensions: 71964
Number of sequences better than 10.0: 327
Number of HSP's better than 10.0 without gapping: 59208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70534
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
