Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005407A_C01 KMC005407A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22381.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.1
ref|NP_508821.1| Zinc finger C2H2 type family member [Caenorhabd... 32 3.6
gb|EAA12956.1| agCP14424 [Anopheles gambiae str. PEST] 32 3.6
pir||T28877 hypothetical protein R08E3.4 - Caenorhabditis elegans 32 3.6
>gb|EAA22381.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2475
Score = 33.1 bits (74), Expect = 2.1
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Frame = +2
Query: 92 SRKSKYHLLLHYLYH--LTNIFIFSIPSSSSHFFNTQIKKPRSRTSNEHNEPSNSG 253
+ ++KYH Y TNIFI S S S+H N + ++ NEHN N+G
Sbjct: 318 TNETKYHKKNKYANENIKTNIFIPSNTSKSTHVENENKNEYKNEYKNEHNNEYNNG 373
>ref|NP_508821.1| Zinc finger C2H2 type family member [Caenorhabditis elegans]
gi|15055415|gb|AAC48197.2| Hypothetical protein R08E3.4
[Caenorhabditis elegans]
Length = 361
Score = 32.3 bits (72), Expect = 3.6
Identities = 36/160 (22%), Positives = 63/160 (38%), Gaps = 32/160 (20%)
Frame = +3
Query: 141 PTSSSSPSHHLHLIFSIPKLKNQDLEPQMSITSQVTVVEVVTCKFPTIKSKHFRDCIQA- 317
PT S HL SI ++ N ++ + Q TV C F T S+H + ++A
Sbjct: 66 PTPSPDSDEHLEHHISITEITNTLIKKEPGTKGQKTVHVCPHCNFTTCMSQHMKSHLEAH 125
Query: 318 -KFQS*QLS-GAPKLQFQRNKN-----------------FSRLQLSTQDTTFKHNLTRRK 440
+ Q K+QF + N F + + +D +H++T K
Sbjct: 126 ERHQGQMYQCDICKMQFSQKANMHRHRMRHSGVKPYECRFCKKRFFRKDQMQEHSMTHIK 185
Query: 441 T-------LTMGGVRFTEHN---SHMYEQK--STGKPHQC 524
T ++ ++F++HN +H+ E S+ P C
Sbjct: 186 TGFGFDCPVSQCNMQFSQHNALRAHLEETHTISSTNPASC 225
>gb|EAA12956.1| agCP14424 [Anopheles gambiae str. PEST]
Length = 553
Score = 32.3 bits (72), Expect = 3.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 366 RNKNFSRLQLSTQDTTFKHNLTRRKTLTMGGVRFTEHNSHMYEQKSTGKPHQC 524
R N S L Q K N+ + +G ++ + SHMY Q G+ H+C
Sbjct: 263 RMSNSSNLLRHVQAVHLKVNIKTCEICDIGFTHYSTYRSHMYAQHGIGELHEC 315
>pir||T28877 hypothetical protein R08E3.4 - Caenorhabditis elegans
Length = 377
Score = 32.3 bits (72), Expect = 3.6
Identities = 36/160 (22%), Positives = 63/160 (38%), Gaps = 32/160 (20%)
Frame = +3
Query: 141 PTSSSSPSHHLHLIFSIPKLKNQDLEPQMSITSQVTVVEVVTCKFPTIKSKHFRDCIQA- 317
PT S HL SI ++ N ++ + Q TV C F T S+H + ++A
Sbjct: 82 PTPSPDSDEHLEHHISITEITNTLIKKEPGTKGQKTVHVCPHCNFTTCMSQHMKSHLEAH 141
Query: 318 -KFQS*QLS-GAPKLQFQRNKN-----------------FSRLQLSTQDTTFKHNLTRRK 440
+ Q K+QF + N F + + +D +H++T K
Sbjct: 142 ERHQGQMYQCDICKMQFSQKANMHRHRMRHSGVKPYECRFCKKRFFRKDQMQEHSMTHIK 201
Query: 441 T-------LTMGGVRFTEHN---SHMYEQK--STGKPHQC 524
T ++ ++F++HN +H+ E S+ P C
Sbjct: 202 TGFGFDCPVSQCNMQFSQHNALRAHLEETHTISSTNPASC 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,280,807
Number of Sequences: 1393205
Number of extensions: 9636562
Number of successful extensions: 23321
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23303
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
