Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005399A_C01 KMC005399A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564678.1| expressed protein; protein id: At1g55170.1, sup... 92 4e-18
pir||D96593 myosin-like protein, 97843-94399 [imported] - Arabid... 80 2e-14
gb|AAL67496.1|AF459411_1 senescence-associated putative protein ... 65 8e-10
gb|AAO60017.1| hypothetical protein [Oryza sativa (japonica cult... 58 1e-07
ref|NP_566492.1| expressed protein; protein id: At3g14750.1, sup... 57 2e-07
>ref|NP_564678.1| expressed protein; protein id: At1g55170.1, supported by cDNA:
121378. [Arabidopsis thaliana]
gi|12321571|gb|AAG50834.1|AC073944_1 hypothetical
protein [Arabidopsis thaliana]
gi|21537137|gb|AAM61478.1| myosin-like protein
[Arabidopsis thaliana] gi|26452460|dbj|BAC43315.1|
putative myosin [Arabidopsis thaliana]
Length = 283
Score = 92.4 bits (228), Expect = 4e-18
Identities = 44/97 (45%), Positives = 66/97 (67%)
Frame = -3
Query: 582 LDYEKKANMDIMEQSQSMQTHLVSMAREVEKLRAELANADGRHWGAGGTYGTKFGSPDGG 403
++YEKK ++MEQ Q+M+ ++VSMAREVEKLRAELA D R WG GG+YG + + DG
Sbjct: 188 IEYEKKEKFELMEQRQTMEKNMVSMAREVEKLRAELATVDSRPWGFGGSYGMNYNNMDGT 247
Query: 402 YTAPYADGYGVHLGAAEKGSLYGASAASRPEKPRMNR 292
+ Y + +LG++E+ Y + S+ +KPR++R
Sbjct: 248 FRGSYGEN-DTYLGSSERSQYYSHGSGSQ-KKPRLDR 282
>pir||D96593 myosin-like protein, 97843-94399 [imported] - Arabidopsis thaliana
gi|12323180|gb|AAG51576.1|AC027034_22 myosin-like
protein; 97843-94399 [Arabidopsis thaliana]
Length = 360
Score = 80.1 bits (196), Expect = 2e-14
Identities = 35/67 (52%), Positives = 48/67 (71%)
Frame = -3
Query: 582 LDYEKKANMDIMEQSQSMQTHLVSMAREVEKLRAELANADGRHWGAGGTYGTKFGSPDGG 403
++YEKK ++MEQ Q+M+ ++VSMAREVEKLRAELA D R WG GG+YG + + DG
Sbjct: 188 IEYEKKEKFELMEQRQTMEKNMVSMAREVEKLRAELATVDSRPWGFGGSYGMNYNNMDGT 247
Query: 402 YTAPYAD 382
+ Y +
Sbjct: 248 FRGSYGE 254
>gb|AAL67496.1|AF459411_1 senescence-associated putative protein [Narcissus pseudonarcissus]
Length = 128
Score = 64.7 bits (156), Expect = 8e-10
Identities = 42/103 (40%), Positives = 53/103 (50%), Gaps = 15/103 (14%)
Frame = -3
Query: 582 LDYEKKANMDIMEQSQSMQTHLVSMAREVEKLRAELANAD---------GRHWGAGGTYG 430
+++EKK + EQ Q M+ +LVSMAREVEKLRAE+ANA+ G A TYG
Sbjct: 7 IEFEKKGYAENYEQGQVMEKNLVSMAREVEKLRAEVANAEKRARAAAAAGSQGFAAATYG 66
Query: 429 TKFGSPDGGY------TAPYADGYGVHLGAAEKGSLYGASAAS 319
+ +PD Y A Y V AA+ G Y A A S
Sbjct: 67 MNYANPDPNYGGNPYPAASYTTNAQVPGNAADGGPQYAAGAGS 109
>gb|AAO60017.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 345
Score = 57.8 bits (138), Expect = 1e-07
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 14/102 (13%)
Frame = -3
Query: 582 LDYEKKANMDIMEQSQSMQTHLVSMAREVEKLRAELANADGRHWGAGGT-------YGTK 424
+++EKKA+ D +EQS++M+ +++++A E+EKLR +LANA+ R T + T
Sbjct: 199 VEFEKKAHADNLEQSKAMEKNMIAVASEIEKLRGDLANAEKRATAVTATAPVANPGFPTT 258
Query: 423 FGSPDGGYTAPYADG-----YGVHLGAAEK--GSLYGASAAS 319
+G+ + Y AP A G Y G E S YG+S A+
Sbjct: 259 YGNSEATYPAPAAYGNSETTYAPTYGNTEAAYASTYGSSEAA 300
>ref|NP_566492.1| expressed protein; protein id: At3g14750.1, supported by cDNA:
gi_14334819, supported by cDNA: gi_15293200 [Arabidopsis
thaliana] gi|14334820|gb|AAK59588.1| unknown protein
[Arabidopsis thaliana] gi|15293201|gb|AAK93711.1|
unknown protein [Arabidopsis thaliana]
Length = 331
Score = 56.6 bits (135), Expect = 2e-07
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Frame = -3
Query: 582 LDYEKKANMDIMEQSQSMQTHLVSMAREVEKLRAELAN------ADGRHWGAGG-TYGTK 424
+DYEKK + E + M+ LV+MARE+EKLRAE+AN A+G GG YG
Sbjct: 210 IDYEKKGYAENYEHGKIMEHKLVAMARELEKLRAEIANSETSAYANGPVGNPGGVAYGGG 269
Query: 423 FGSPDGGYTA-PYADGY 376
+G+P+ GY PY Y
Sbjct: 270 YGNPEAGYPVNPYQPNY 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,447,924
Number of Sequences: 1393205
Number of extensions: 12858467
Number of successful extensions: 43928
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 40038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43545
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
