Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005384A_C01 KMC005384A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana] 110 1e-23
gb|AAF79217.1|AC006917_2 F10B6.3 [Arabidopsis thaliana] 110 1e-23
ref|NP_178306.1| endomembrane protein 70, putative; protein id: ... 110 1e-23
ref|NP_172919.1| endomembrane protein 70, putative; protein id: ... 110 1e-23
dbj|BAB09103.1| endosomal protein-like [Arabidopsis thaliana] 107 5e-23
>gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana]
Length = 546
Score = 110 bits (274), Expect = 1e-23
Identities = 50/54 (92%), Positives = 51/54 (93%)
Frame = -3
Query: 487 YYYARSDMSGFMPTSFFFGYMACICYGFFLMLGAVGFRASLLFVRHIYRSITCE 326
YYYARSDMSGFM TSFFFGYMACICYGFFLMLG VGFRA+LLFVRHIYRSI CE
Sbjct: 493 YYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 546
>gb|AAF79217.1|AC006917_2 F10B6.3 [Arabidopsis thaliana]
Length = 336
Score = 110 bits (274), Expect = 1e-23
Identities = 50/54 (92%), Positives = 51/54 (93%)
Frame = -3
Query: 487 YYYARSDMSGFMPTSFFFGYMACICYGFFLMLGAVGFRASLLFVRHIYRSITCE 326
YYYARSDMSGFM TSFFFGYMACICYGFFLMLG VGFRA+LLFVRHIYRSI CE
Sbjct: 283 YYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 336
>ref|NP_178306.1| endomembrane protein 70, putative; protein id: At2g01970.1,
supported by cDNA: gi_16604500 [Arabidopsis thaliana]
gi|25346718|pir||D84431 probable endosomal protein
[imported] - Arabidopsis thaliana
gi|4406780|gb|AAD20090.1| putative endosomal protein
[Arabidopsis thaliana] gi|16604501|gb|AAL24256.1|
At2g01970/F14H20.4 [Arabidopsis thaliana]
Length = 592
Score = 110 bits (274), Expect = 1e-23
Identities = 50/54 (92%), Positives = 51/54 (93%)
Frame = -3
Query: 487 YYYARSDMSGFMPTSFFFGYMACICYGFFLMLGAVGFRASLLFVRHIYRSITCE 326
YYYARSDMSGFM TSFFFGYMACICYGFFLMLG VGFRA+LLFVRHIYRSI CE
Sbjct: 539 YYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 592
>ref|NP_172919.1| endomembrane protein 70, putative; protein id: At1g14670.1,
supported by cDNA: gi_15450754, supported by cDNA:
gi_20334721 [Arabidopsis thaliana]
gi|15450755|gb|AAK96649.1| T5E21.14/T5E21.14
[Arabidopsis thaliana] gi|20334722|gb|AAM16222.1|
At1g14670/T5E21.14 [Arabidopsis thaliana]
Length = 592
Score = 110 bits (274), Expect = 1e-23
Identities = 50/54 (92%), Positives = 51/54 (93%)
Frame = -3
Query: 487 YYYARSDMSGFMPTSFFFGYMACICYGFFLMLGAVGFRASLLFVRHIYRSITCE 326
YYYARSDMSGFM TSFFFGYMACICYGFFLMLG VGFRA+LLFVRHIYRSI CE
Sbjct: 539 YYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 592
>dbj|BAB09103.1| endosomal protein-like [Arabidopsis thaliana]
Length = 593
Score = 107 bits (268), Expect = 5e-23
Identities = 49/54 (90%), Positives = 50/54 (91%)
Frame = -3
Query: 487 YYYARSDMSGFMPTSFFFGYMACICYGFFLMLGAVGFRASLLFVRHIYRSITCE 326
YYYARSDMSGFM TSFFFGYMACICYGFFLMLG +GF ASLLFVRHIYRSI CE
Sbjct: 540 YYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTIGFCASLLFVRHIYRSIKCE 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,742,190
Number of Sequences: 1393205
Number of extensions: 7665815
Number of successful extensions: 17376
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 16930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17358
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
