Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005381A_C01 KMC005381A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563858.1| expressed protein; protein id: At1g10030.1, sup... 100 2e-20
gb|AAM62559.1| unknown [Arabidopsis thaliana] 98 7e-20
sp|O80594|Y103_ARATH Hypothetical protein At1g10030 gi|7487491|p... 79 4e-14
emb|CAD62345.1| unnamed protein product [Homo sapiens] 38 0.083
gb|AAD51373.1|AC007182_2 unknown [Homo sapiens] 38 0.083
>ref|NP_563858.1| expressed protein; protein id: At1g10030.1, supported by cDNA:
145854. [Arabidopsis thaliana]
Length = 129
Score = 99.8 bits (247), Expect = 2e-20
Identities = 46/61 (75%), Positives = 50/61 (81%)
Frame = -2
Query: 524 LCAFNLEYKPLYLATLLSFFYALAHFLTEYLIYPTMEFSNLTPVGIFAGPSIVWMLLQWN 345
LCAFNLE KPLYLAT LSF YAL HFLTEYL Y TM +NL+ VG FAG SIVWMLL+WN
Sbjct: 60 LCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAGTSIVWMLLEWN 119
Query: 344 N 342
+
Sbjct: 120 S 120
>gb|AAM62559.1| unknown [Arabidopsis thaliana]
Length = 129
Score = 97.8 bits (242), Expect = 7e-20
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = -2
Query: 524 LCAFNLEYKPLYLATLLSFFYALAHFLTEYLIYPTMEFSNLTPVGIFAGPSIVWMLLQWN 345
LCAFNLE KPLYLAT LSF YAL HFLTEYL + TM +NL+ VG FAG SIVWMLL+WN
Sbjct: 60 LCAFNLENKPLYLATFLSFIYALGHFLTEYLFHQTMTIANLSTVGFFAGTSIVWMLLEWN 119
Query: 344 N 342
+
Sbjct: 120 S 120
>sp|O80594|Y103_ARATH Hypothetical protein At1g10030 gi|7487491|pir||T00622 hypothetical
protein T27I1.5 - Arabidopsis thaliana
gi|3540193|gb|AAC34343.1| Unknown protein [Arabidopsis
thaliana]
Length = 110
Score = 78.6 bits (192), Expect = 4e-14
Identities = 37/49 (75%), Positives = 39/49 (79%)
Frame = -2
Query: 524 LCAFNLEYKPLYLATLLSFFYALAHFLTEYLIYPTMEFSNLTPVGIFAG 378
LCAFNLE KPLYLAT LSF YAL HFLTEYL Y TM +NL+ VG FAG
Sbjct: 60 LCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAG 108
>emb|CAD62345.1| unnamed protein product [Homo sapiens]
Length = 139
Score = 37.7 bits (86), Expect = 0.083
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -2
Query: 524 LCAFNLEYKPLYLATLLSFFYALAHFLTEYLIYPT 420
LCA ++ K LY TL +F AL HFL+E +Y T
Sbjct: 66 LCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGT 100
>gb|AAD51373.1|AC007182_2 unknown [Homo sapiens]
Length = 154
Score = 37.7 bits (86), Expect = 0.083
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -2
Query: 524 LCAFNLEYKPLYLATLLSFFYALAHFLTEYLIYPT 420
LCA ++ K LY TL +F AL HFL+E +Y T
Sbjct: 80 LCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGT 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,961,608
Number of Sequences: 1393205
Number of extensions: 9596128
Number of successful extensions: 20957
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20955
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
