Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005380A_C01 KMC005380A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM19354.1|AF369887_1 ribulose-5-phosphate-3-epimerase [Pisum... 257 4e-70
sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplast ... 256 9e-69
gb|AAC24709.1| ribulose-phosphate 3-epimerase transit form [Expr... 256 9e-69
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplast ... 251 4e-66
ref|NP_200949.1| ribulose-5-phosphate-3-epimerase; protein id: A... 249 1e-65
>gb|AAM19354.1|AF369887_1 ribulose-5-phosphate-3-epimerase [Pisum sativum]
Length = 281
Score = 257 bits (657), Expect(2) = 4e-70
Identities = 126/137 (91%), Positives = 133/137 (96%)
Frame = +3
Query: 129 HPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIH 308
H SLTFSRRK ST+VKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIH
Sbjct: 29 HSPSLTFSRRKFSTVVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIH 88
Query: 309 VDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSIHCEQ 488
+DVMDGRFVPNITIGPL+VDALRPVTDLPLDVHLMIVEP+QRVPDFIKAGADI+S+HCEQ
Sbjct: 89 IDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIISVHCEQ 148
Query: 489 SSTIHLHRTVDQVKSLG 539
SSTIHLHR V+QVKSLG
Sbjct: 149 SSTIHLHRAVNQVKSLG 165
Score = 29.3 bits (64), Expect(2) = 4e-70
Identities = 17/30 (56%), Positives = 19/30 (62%), Gaps = 5/30 (16%)
Frame = +2
Query: 53 LCSSTLQSQING-----PSSLHSKTRYFQQ 127
LCSSTLQSQING S LHS + F +
Sbjct: 8 LCSSTLQSQINGLSLRKTSLLHSPSLTFSR 37
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplast precursor
(Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E)
gi|2129493|pir||S62724 ribulose-phosphate 3-epimerase
(EC 5.1.3.1) precursor - spinach
gi|1162980|gb|AAC41677.1| ribulose-5-phosphate
3-epimerase gi|3264788|gb|AAC24708.1| ribulose-phosphate
3-epimerase [Spinacia oleracea] gi|1587969|prf||2207382A
D-ribulose-5-phosphate 3-epimerase
Length = 285
Score = 256 bits (653), Expect(2) = 9e-69
Identities = 126/144 (87%), Positives = 136/144 (93%)
Frame = +3
Query: 108 KLAIFNNHPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVEL 287
KL + P SLTF+RRK+ T+VKA+SRVDKFSKSDIIVSPSILSANFAKLGEQVKAVEL
Sbjct: 26 KLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVEL 85
Query: 288 AGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 467
AGCDWIHVDVMDGRFVPNITIGPL+VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI
Sbjct: 86 AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 145
Query: 468 VSIHCEQSSTIHLHRTVDQVKSLG 539
VS+HCE +STIHLHRTV+Q+KSLG
Sbjct: 146 VSVHCELASTIHLHRTVNQIKSLG 169
Score = 26.2 bits (56), Expect(2) = 9e-69
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 53 LCSSTLQSQING 88
LC STLQSQING
Sbjct: 6 LCQSTLQSQING 17
>gb|AAC24709.1| ribulose-phosphate 3-epimerase transit form [Expression vector
pFL505]
Length = 285
Score = 256 bits (653), Expect(2) = 9e-69
Identities = 126/144 (87%), Positives = 136/144 (93%)
Frame = +3
Query: 108 KLAIFNNHPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVEL 287
KL + P SLTF+RRK+ T+VKA+SRVDKFSKSDIIVSPSILSANFAKLGEQVKAVEL
Sbjct: 26 KLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVEL 85
Query: 288 AGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 467
AGCDWIHVDVMDGRFVPNITIGPL+VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI
Sbjct: 86 AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 145
Query: 468 VSIHCEQSSTIHLHRTVDQVKSLG 539
VS+HCE +STIHLHRTV+Q+KSLG
Sbjct: 146 VSVHCELASTIHLHRTVNQIKSLG 169
Score = 26.2 bits (56), Expect(2) = 9e-69
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 53 LCSSTLQSQING 88
LC STLQSQING
Sbjct: 6 LCQSTLQSQING 17
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplast precursor
(Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E)
gi|7437282|pir||S68407 ribulose-phosphate 3-epimerase
(EC 5.1.3.1) precursor - potato (fragment)
gi|902739|emb|CAA90426.1|
pentose-5-phosphate-3-epimerase [Solanum tuberosum]
Length = 280
Score = 251 bits (641), Expect = 4e-66
Identities = 119/138 (86%), Positives = 134/138 (96%)
Frame = +3
Query: 126 NHPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWI 305
++P SLTF+RR+I T+V ASSRVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWI
Sbjct: 27 SNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWI 86
Query: 306 HVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSIHCE 485
HVDVMDGRFVPNITIGPL+VD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVS+HCE
Sbjct: 87 HVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE 146
Query: 486 QSSTIHLHRTVDQVKSLG 539
QSSTIHLHRT++Q+KSLG
Sbjct: 147 QSSTIHLHRTINQIKSLG 164
>ref|NP_200949.1| ribulose-5-phosphate-3-epimerase; protein id: At5g61410.1,
supported by cDNA: gi_15027996, supported by cDNA:
gi_20259208, supported by cDNA: gi_4102702 [Arabidopsis
thaliana] gi|4102703|gb|AAD09954.1|
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
gi|9757862|dbj|BAB08496.1|
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
gi|15027997|gb|AAK76529.1| putative
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
gi|20259209|gb|AAM14320.1| putative
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
Length = 281
Score = 249 bits (637), Expect = 1e-65
Identities = 123/136 (90%), Positives = 130/136 (95%)
Frame = +3
Query: 132 PRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 311
P S +FSRR+ IVKASSRVD+FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV
Sbjct: 30 PTSFSFSRRRTHGIVKASSRVDRFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 89
Query: 312 DVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSIHCEQS 491
DVMDGRFVPNITIGPL+VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS+HCEQ
Sbjct: 90 DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQQ 149
Query: 492 STIHLHRTVDQVKSLG 539
STIHLHRTV+Q+KSLG
Sbjct: 150 STIHLHRTVNQIKSLG 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,803,440
Number of Sequences: 1393205
Number of extensions: 10845201
Number of successful extensions: 31677
Number of sequences better than 10.0: 218
Number of HSP's better than 10.0 without gapping: 30151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31516
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
