Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005375A_C01 KMC005375A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198552.1| putative protein; protein id: At5g37360.1, supp... 139 2e-32
ref|NP_346972.1| Uncharacterized membrane protein, homolog of YP... 35 0.51
ref|NP_294208.1| glutamyl-tRNA synthetase [Deinococcus radiodura... 33 1.9
ref|NP_296470.1| major outer membrane protein, putative [Chlamyd... 33 3.3
dbj|BAB87544.1| vacuolating cytotoxin [Helicobacter pylori] 33 3.3
>ref|NP_198552.1| putative protein; protein id: At5g37360.1, supported by cDNA:
gi_16604481 [Arabidopsis thaliana]
gi|16604482|gb|AAL24247.1| AT5g37360/MNJ8_150
[Arabidopsis thaliana] gi|21655281|gb|AAM65352.1|
AT5g37360/MNJ8_150 [Arabidopsis thaliana]
Length = 309
Score = 139 bits (350), Expect = 2e-32
Identities = 70/118 (59%), Positives = 90/118 (75%)
Frame = -2
Query: 569 MIAAGRVLSASSTSAVIDEQPKEETRMLKFGDLQVEVTLEKAIIGAVIGTIFGVLSWEIA 390
MI G VLSA ++S + + K TRM KFG+LQV VT EKA GA I I+G+LSW+I+
Sbjct: 191 MITTGGVLSAKTSSVSVSNESKSGTRMFKFGELQVAVTPEKAYTGAAIAFIYGILSWQIS 250
Query: 389 QGIQSVPESSSQYANDSAFALAKSLRGALISLFYASTLLSASTSVGLVLLAIQLKSKK 216
QGIQS+PE+S QYAND+A + KSLRG+L++LFYAST+LS T+ GL+LLA QL S+K
Sbjct: 251 QGIQSIPENSLQYANDNALLIGKSLRGSLLALFYASTVLSGFTTAGLILLAKQLSSEK 308
>ref|NP_346972.1| Uncharacterized membrane protein, homolog of YPAA B.subtilis
[Clostridium acetobutylicum] gi|25498839|pir||E96940
uncharacterized membrane protein, homolog of YPAA B.
subtilis [imported] - Clostridium acetobutylicum
gi|15023177|gb|AAK78312.1|AE007548_2 Uncharacterized
membrane protein, homolog of YPAA B.subtilis
[Clostridium acetobutylicum]
Length = 192
Score = 35.4 bits (80), Expect = 0.51
Identities = 26/63 (41%), Positives = 32/63 (50%)
Frame = -2
Query: 455 LEKAIIGAVIGTIFGVLSWEIAQGIQSVPESSSQYANDSAFALAKSLRGALISLFYASTL 276
LE I+G IG IFGV S I Q I S S Y N L + L G ++ +YA TL
Sbjct: 53 LEGPIVGVAIGLIFGVFS--IIQNIMSPNLLSFAYMNPLVSVLPRVLIG--VTSYYAYTL 108
Query: 275 LSA 267
+ A
Sbjct: 109 IKA 111
>ref|NP_294208.1| glutamyl-tRNA synthetase [Deinococcus radiodurans]
gi|7471956|pir||H75514 glutamyl-tRNA synthetase -
Deinococcus radiodurans (strain R1)
gi|6458171|gb|AAF10063.1|AE001907_9 glutamyl-tRNA
synthetase [Deinococcus radiodurans]
Length = 525
Score = 33.5 bits (75), Expect = 1.9
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Frame = +1
Query: 160 LYYTIYNENLGEKAQKA*FFFDLSCIASRTSPTDVDADKSV--EA*KREINAPLKDLASA 333
LY+ + + EKAQKA +DA K + E R N P D AS
Sbjct: 427 LYFWSEDYPVNEKAQKA-----------------IDAGKELLPELAARLKNLPTFDAASI 469
Query: 334 KALSFAYCEELSGTL*IP*AISHERTPKIVPITAPIMAFSSVTSTCKSPNFSILVSSLGC 513
K + AY E E+ K+ + PI A +V T +SP+ ++ +LG
Sbjct: 470 KEMFHAYAE--------------EKGLKMGKVMPPIRA--AVAGTMESPDLPEMLEALGR 513
Query: 514 SSITADVELADR 549
+ A VE A R
Sbjct: 514 ERVLARVEKAAR 525
>ref|NP_296470.1| major outer membrane protein, putative [Chlamydia muridarum]
gi|14194993|sp|Q9PLL3|OMP2_CHLMU Outer membrane protein
B precursor gi|11362246|pir||H81742 major outer membrane
protein, probable TC0086 [imported] - Chlamydia
muridarum (strain Nigg) gi|7190120|gb|AAF38966.1| major
outer membrane protein, putative [Chlamydia muridarum]
Length = 340
Score = 32.7 bits (73), Expect = 3.3
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 397 SHERTPKIVPI-----TAPIMAFSSVTSTCKSPNFSILVSSLGCSSITADVELADRTLPA 561
S E K VP+ T+ + ++TST K+ NF ++ SL + + A L DRT+ A
Sbjct: 77 SEEAQVKDVPVVTSVTTSGVGPSPTITSTTKNRNFDLVDCSLSANCVAAAFSLPDRTMSA 136
>dbj|BAB87544.1| vacuolating cytotoxin [Helicobacter pylori]
Length = 74
Score = 32.7 bits (73), Expect = 3.3
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -2
Query: 551 VLSASSTSAVIDEQPKEETRMLKFGDLQVEVTLEKAIIGAVIGTIFGVLSWEIAQ 387
++S A+I P +E++ L F + + + GA +GT+ G++SWE+ Q
Sbjct: 2 LVSLVLAGALISATP-QESKALAFTTMFIPAIIGGIATGAAVGTVSGLISWELKQ 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,563,479
Number of Sequences: 1393205
Number of extensions: 9509887
Number of successful extensions: 31131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31121
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
