Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005373A_C01 KMC005373A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564030.1| Expressed protein; protein id: At1g17650.1, sup... 157 1e-37
gb|AAF79475.1|AC022492_19 F1L3.35 [Arabidopsis thaliana] 157 1e-37
dbj|BAB91904.1| putative gamma hydroxybutyrate dehydrogenase [Or... 150 8e-36
gb|AAO72678.1| gamma hydroxybutyrate dehydrogenase-like protein ... 103 1e-21
gb|AAK94781.1| gamma hydroxybutyrate dehydrogenase [Arabidopsis ... 103 2e-21
>ref|NP_564030.1| Expressed protein; protein id: At1g17650.1, supported by cDNA:
17110., supported by cDNA: gi_20260471 [Arabidopsis
thaliana] gi|20260472|gb|AAM13134.1| unknown protein
[Arabidopsis thaliana] gi|21553816|gb|AAM62909.1|
unknown [Arabidopsis thaliana]
Length = 343
Score = 157 bits (396), Expect = 1e-37
Identities = 78/90 (86%), Positives = 87/90 (96%)
Frame = -1
Query: 565 DPKVLVEVISQGAISAPMYSMKGPSMIQSLYPTAFPLKHQQKDLRLALGLAESVSQPIPI 386
DP VLVEV+SQGAI+APMYS+KGPSMI+S+YPTAFPLKHQQKD+RLALGLAESVSQ PI
Sbjct: 248 DPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAESVSQSTPI 307
Query: 385 AAAANELYKVAKSHGLSDQDFSAVIEALKS 296
AAAANELYKVAKS+GLSD+DFSAVIEALK+
Sbjct: 308 AAAANELYKVAKSYGLSDEDFSAVIEALKA 337
>gb|AAF79475.1|AC022492_19 F1L3.35 [Arabidopsis thaliana]
Length = 387
Score = 157 bits (396), Expect = 1e-37
Identities = 78/90 (86%), Positives = 87/90 (96%)
Frame = -1
Query: 565 DPKVLVEVISQGAISAPMYSMKGPSMIQSLYPTAFPLKHQQKDLRLALGLAESVSQPIPI 386
DP VLVEV+SQGAI+APMYS+KGPSMI+S+YPTAFPLKHQQKD+RLALGLAESVSQ PI
Sbjct: 292 DPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAESVSQSTPI 351
Query: 385 AAAANELYKVAKSHGLSDQDFSAVIEALKS 296
AAAANELYKVAKS+GLSD+DFSAVIEALK+
Sbjct: 352 AAAANELYKVAKSYGLSDEDFSAVIEALKA 381
>dbj|BAB91904.1| putative gamma hydroxybutyrate dehydrogenase [Oryza sativa
(japonica cultivar-group)]
Length = 343
Score = 150 bits (380), Expect = 8e-36
Identities = 77/93 (82%), Positives = 84/93 (89%)
Frame = -1
Query: 565 DPKVLVEVISQGAISAPMYSMKGPSMIQSLYPTAFPLKHQQKDLRLALGLAESVSQPIPI 386
DP LVEVISQGAISAPM+S+KGPSM+++ YPTAFPLKHQQKDLRLAL LAESVSQ IP
Sbjct: 249 DPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLRLALALAESVSQSIPT 308
Query: 385 AAAANELYKVAKSHGLSDQDFSAVIEALKSKFQ 287
AAANELYKVAKS GL+DQDFSAVIEALK+K Q
Sbjct: 309 VAAANELYKVAKSLGLADQDFSAVIEALKAKEQ 341
>gb|AAO72678.1| gamma hydroxybutyrate dehydrogenase-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 293
Score = 103 bits (258), Expect = 1e-21
Identities = 50/88 (56%), Positives = 66/88 (74%)
Frame = -1
Query: 562 PKVLVEVISQGAISAPMYSMKGPSMIQSLYPTAFPLKHQQKDLRLALGLAESVSQPIPIA 383
P+ L++V+ GAI+ PM+ +KGPSM+Q Y AFPLKHQQKD+RLAL L + + +P+A
Sbjct: 198 PQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDMRLALALGDENAVSMPVA 257
Query: 382 AAANELYKVAKSHGLSDQDFSAVIEALK 299
AA+NE +K A+S GL D DFSAV E LK
Sbjct: 258 AASNEAFKKARSLGLGDLDFSAVYEVLK 285
>gb|AAK94781.1| gamma hydroxybutyrate dehydrogenase [Arabidopsis thaliana]
Length = 289
Score = 103 bits (256), Expect = 2e-21
Identities = 50/85 (58%), Positives = 66/85 (76%)
Frame = -1
Query: 553 LVEVISQGAISAPMYSMKGPSMIQSLYPTAFPLKHQQKDLRLALGLAESVSQPIPIAAAA 374
L++++ GA++ PM+ KGPSM +S YP AFPLKHQQKD+RLAL L + + +P+AAAA
Sbjct: 201 LLDILDLGAMTNPMFKGKGPSMTKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAA 260
Query: 373 NELYKVAKSHGLSDQDFSAVIEALK 299
NE +K A+S GL D DFSAVIEA+K
Sbjct: 261 NEAFKKARSLGLGDLDFSAVIEAVK 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,667,139
Number of Sequences: 1393205
Number of extensions: 8630050
Number of successful extensions: 19180
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 18628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19177
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
