Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005371A_C01 KMC005371A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201477.1| succinate dehydrogenase flavoprotein alpha subu... 178 4e-44
ref|NP_179435.1| putative succinate dehydrogenase flavoprotein s... 176 2e-43
ref|NP_778583.1| succinate dehydrogenase flavoprotein subunit [X... 129 2e-29
gb|ZP_00039805.1| hypothetical protein [Xylella fastidiosa Dixon] 129 2e-29
gb|ZP_00041090.1| hypothetical protein [Xylella fastidiosa Ann-1] 129 2e-29
>ref|NP_201477.1| succinate dehydrogenase flavoprotein alpha subunit
(emb|CAA05025.1); protein id: At5g66760.1, supported by
cDNA: gi_13605884, supported by cDNA: gi_15010745,
supported by cDNA: gi_16930698 [Arabidopsis thaliana]
gi|20454872|sp|O82663|DHSA_ARATH Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (FP)
(Flavoprotein subunit of complex II)
gi|11252512|pir||T51815 succinate dehydrogenase (EC
1.3.99.1) flavoprotein alpha chain [imported] -
Arabidopsis thaliana gi|3660471|emb|CAA05025.1|
succinate dehydrogenase flavoprotein alpha subunit
[Arabidopsis thaliana] gi|8843734|dbj|BAA97282.1|
succinate dehydrogenase flavoprotein alpha subunit
[Arabidopsis thaliana]
gi|13605885|gb|AAK32928.1|AF367341_1 AT5g66760/MSN2_16
[Arabidopsis thaliana] gi|15010746|gb|AAK74032.1|
AT5g66760/MSN2_16 [Arabidopsis thaliana]
gi|16930699|gb|AAL32015.1|AF436833_1 AT5g66760/MSN2_16
[Arabidopsis thaliana] gi|21700795|gb|AAM70521.1|
AT5g66760/MSN2_16 [Arabidopsis thaliana]
Length = 634
Score = 178 bits (451), Expect = 4e-44
Identities = 81/105 (77%), Positives = 92/105 (87%)
Frame = -3
Query: 535 DKTWESFHDIKLKDRGLIWNTDLIETIELENLLINACITMHSAEARKESRGAHFHEDFPK 356
DK WESF D+++KDR +IWN+DLIET+ELENLLINA ITMHSAEARKESRGAH EDF K
Sbjct: 530 DKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDFTK 589
Query: 355 RDDENWMKHTVGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 221
R+D WMKHT+GYWE+EKVRLDYRPVHM+TLDDE + PP ARVY
Sbjct: 590 REDGEWMKHTLGYWEDEKVRLDYRPVHMDTLDDEIDTFPPKARVY 634
>ref|NP_179435.1| putative succinate dehydrogenase flavoprotein subunit; protein id:
At2g18450.1 [Arabidopsis thaliana]
gi|25284602|pir||D84564 hypothetical protein At2g18450
[imported] - Arabidopsis thaliana
gi|4309723|gb|AAD15493.1| putative succinate
dehydrogenase flavoprotein subunit [Arabidopsis
thaliana] gi|26453278|dbj|BAC43712.1| putative succinate
dehydrogenase flavoprotein subunit [Arabidopsis
thaliana] gi|29028988|gb|AAO64873.1| At2g18450
[Arabidopsis thaliana]
Length = 632
Score = 176 bits (445), Expect = 2e-43
Identities = 78/105 (74%), Positives = 89/105 (84%)
Frame = -3
Query: 535 DKTWESFHDIKLKDRGLIWNTDLIETIELENLLINACITMHSAEARKESRGAHFHEDFPK 356
DKTW+SF D+K+ DR +IWN+DLIET+ELENLL+NACITMHSAEARKESRGAH EDF K
Sbjct: 528 DKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDFTK 587
Query: 355 RDDENWMKHTVGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 221
RDD NWMKHT+GYWE V+L+YRPVHM TLDDE + PP RVY
Sbjct: 588 RDDANWMKHTLGYWEEGNVKLEYRPVHMKTLDDEVDTFPPKPRVY 632
>ref|NP_778583.1| succinate dehydrogenase flavoprotein subunit [Xylella fastidiosa
Temecula1] gi|28056339|gb|AAO28232.1| succinate
dehydrogenase flavoprotein subunit [Xylella fastidiosa
Temecula1]
Length = 596
Score = 129 bits (325), Expect = 2e-29
Identities = 61/100 (61%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Frame = -3
Query: 517 FHDIKLKDRGLIWNTDLIETIELENLLINACITMHSAEARKESRGAHFHEDFPKRDDENW 338
F D+K+ DR L+WN+DLIET EL NLL+NA T++SAE RKESRGAH HED+P RDDENW
Sbjct: 497 FDDVKVSDRSLVWNSDLIETYELHNLLLNALATINSAEQRKESRGAHAHEDYPDRDDENW 556
Query: 337 MKHT-VGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 221
+KHT V E DYRPVHM TL + + +PP RVY
Sbjct: 557 LKHTLVSVDEKGSCSFDYRPVHMYTLSKDVDVIPPKPRVY 596
>gb|ZP_00039805.1| hypothetical protein [Xylella fastidiosa Dixon]
Length = 596
Score = 129 bits (325), Expect = 2e-29
Identities = 62/100 (62%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Frame = -3
Query: 517 FHDIKLKDRGLIWNTDLIETIELENLLINACITMHSAEARKESRGAHFHEDFPKRDDENW 338
F DIK+ DR L+WN+DLIET EL NLL+NA T++SAE RKESRGAH HED+P RDDENW
Sbjct: 497 FDDIKVSDRSLVWNSDLIETYELHNLLLNALATINSAEQRKESRGAHAHEDYPDRDDENW 556
Query: 337 MKHT-VGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 221
+KHT V E DYRPVHM TL + + +PP RVY
Sbjct: 557 LKHTLVSVDEKGTCSFDYRPVHMYTLSKDVDVIPPKPRVY 596
>gb|ZP_00041090.1| hypothetical protein [Xylella fastidiosa Ann-1]
Length = 596
Score = 129 bits (324), Expect = 2e-29
Identities = 61/100 (61%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Frame = -3
Query: 517 FHDIKLKDRGLIWNTDLIETIELENLLINACITMHSAEARKESRGAHFHEDFPKRDDENW 338
F D+K+ DR L+WN+DLIET EL NLL+NA T++SAE RKESRGAH HED+P RDDENW
Sbjct: 497 FDDVKVSDRSLVWNSDLIETYELHNLLLNALATINSAEQRKESRGAHAHEDYPDRDDENW 556
Query: 337 MKHT-VGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY 221
+KHT V E DYRPVHM TL + + +PP RVY
Sbjct: 557 LKHTLVSVDEKGTCSFDYRPVHMYTLSKDVDVIPPKPRVY 596
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,650,712
Number of Sequences: 1393205
Number of extensions: 9563671
Number of successful extensions: 30998
Number of sequences better than 10.0: 254
Number of HSP's better than 10.0 without gapping: 30333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30898
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
