Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005370A_C01 KMC005370A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO81920.1| racemase domain protein [Enterococcus faecalis V583] 36 0.30
pir||JC5805 transcription factor NFATc - mouse 32 3.3
pir||T45069 8-hydroxy-guanine glycosylase homolog ogg1 [imported... 32 4.3
ref|NP_572463.1| stardust CG32717-PB gi|22831935|gb|AAF46351.2| ... 32 4.3
gb|AAL40935.1|AF414117_1 stardust protein MAGUK1 isoform [Drosop... 32 4.3
>gb|AAO81920.1| racemase domain protein [Enterococcus faecalis V583]
Length = 234
Score = 35.8 bits (81), Expect = 0.30
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 143 NFILYHLMNRGKFSLML*CLLPFVPSLNVEWLHLVFSLSIYFDYY 9
NF+ + RGK S +L LL +VP + V W + +S++ YY
Sbjct: 98 NFVKGEMDLRGKISFILSILLGYVPRIGVSWYLIALVMSVFIIYY 142
>pir||JC5805 transcription factor NFATc - mouse
Length = 718
Score = 32.3 bits (72), Expect = 3.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 221 ARGEEHMQFASTARVA*SSSCPQFRNSATGAAAVSSFYNPP 343
A EEH + STA A ++C + S G +AV S +PP
Sbjct: 49 AAEEEHYSYVSTAHSALPAACHDLQTSTPGISAVPSANHPP 89
>pir||T45069 8-hydroxy-guanine glycosylase homolog ogg1 [imported] - human
gi|4210714|emb|CAA10351.1| 8-hydroxy-guanine glycosylase
[Homo sapiens]
Length = 346
Score = 32.0 bits (71), Expect = 4.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +2
Query: 341 PRKLGSRLDLMASKSEVWASIECNQASL*FN-------SFHWCRGPSSSTWEKLL 484
PR++G R +AS +WASI C ++ L + SF W R S + W +L
Sbjct: 8 PRRMGHRT--LASTPALWASIPCPRSELRLDLVLPSGQSFRWWREQSPAHWSGVL 60
>ref|NP_572463.1| stardust CG32717-PB gi|22831935|gb|AAF46351.2| CG32717-PB
[Drosophila melanogaster]
Length = 1292
Score = 32.0 bits (71), Expect = 4.3
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -3
Query: 365 PTVSLASLEGYRMRKQPRPPSRNFGIVGNCWIKPPLPLMQTACAPLPEHHQPL*VLLP-- 192
PT ++ + G + P RN G+V + PP PL Q PLP P V +P
Sbjct: 749 PTPAIGAATGSTLSSPVAGPKRNLGMVVPPPVVPP-PLAQRGAMPLPRGESPPPVPMPPL 807
Query: 191 ADSLIFL*VELPQS 150
A + + V LP S
Sbjct: 808 ATMPMSMPVNLPMS 821
>gb|AAL40935.1|AF414117_1 stardust protein MAGUK1 isoform [Drosophila melanogaster]
Length = 1289
Score = 32.0 bits (71), Expect = 4.3
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -3
Query: 365 PTVSLASLEGYRMRKQPRPPSRNFGIVGNCWIKPPLPLMQTACAPLPEHHQPL*VLLP-- 192
PT ++ + G + P RN G+V + PP PL Q PLP P V +P
Sbjct: 746 PTPAIGAATGSTLSSPVAGPKRNLGMVVPPPVVPP-PLAQRGAMPLPRGESPPPVPMPPL 804
Query: 191 ADSLIFL*VELPQS 150
A + + V LP S
Sbjct: 805 ATMPMSMPVNLPMS 818
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,184,155
Number of Sequences: 1393205
Number of extensions: 9369504
Number of successful extensions: 23489
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23479
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
