Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005367A_C01 KMC005367A_c01
(777 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P12372|PSAD_LYCES Photosystem I reaction center subunit II, c... 333 1e-90
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 330 1e-89
sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 323 2e-87
pir||A1SP2 photosystem I chain II precursor - spinach gi|21289|e... 322 5e-87
pir||S37380 photosystem I chain II.D1 precursor - wood tobacco g... 319 3e-86
>sp|P12372|PSAD_LYCES Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
gi|82100|pir||S00449 photosystem I chain II precursor -
tomato gi|170492|gb|AAA34185.1| photosystem I subunit II
protein precursor gi|226544|prf||1601516A photosystem I
reaction center II
Length = 208
Score = 333 bits (855), Expect = 1e-90
Identities = 175/214 (81%), Positives = 184/214 (85%), Gaps = 3/214 (1%)
Frame = -3
Query: 751 MAMATQASLFSPPLS--GRVSAPWKQSPTLSFTNTKPLKFTTSPRTTTTTIRAADEKTEA 578
MAMATQASLF+PPLS +APWKQS +SF+ K LK T S T IRA E EA
Sbjct: 1 MAMATQASLFTPPLSVPKSTTAPWKQS-LVSFSTPKQLKSTVS---VTRPIRAMAE--EA 54
Query: 577 PVATKEA-APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 401
P AT+E AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT
Sbjct: 55 PAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 114
Query: 400 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 221
GGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 115 GGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEK 174
Query: 220 VNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDV 119
VNPGR+GVGQNFRSIGKN S IEVKFTGKQ YD+
Sbjct: 175 VNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D) (PS I subunit 5)
gi|320209|pir||A60695 photosystem I chain II precursor -
cucumber gi|227772|prf||1710320A photosystem I 20kD
protein
Length = 207
Score = 330 bits (847), Expect = 1e-89
Identities = 170/216 (78%), Positives = 180/216 (82%), Gaps = 5/216 (2%)
Frame = -3
Query: 751 MAMATQASLFSP----PLSGRVSAPWKQSPTLSFTNTKP-LKFTTSPRTTTTTIRAADEK 587
MAMATQA+LF+P P S +S PWKQS TLSF +KP LK +S R+ K
Sbjct: 1 MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSF---------K 51
Query: 586 TEAPVATKEAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEM 407
A T AP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEM
Sbjct: 52 VSAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEM 111
Query: 406 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYP 227
PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYP
Sbjct: 112 PTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYP 171
Query: 226 EKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDV 119
EKVNPGR+GVGQNFRSIGKNVSPIEVKFTGKQ YD+
Sbjct: 172 EKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
gi|100292|pir||S18348 photosystem I chain II.D2
precursor - wood tobacco gi|19748|emb|CAA42623.1| PSI-D2
[Nicotiana sylvestris]
Length = 204
Score = 323 bits (827), Expect = 2e-87
Identities = 175/214 (81%), Positives = 183/214 (84%), Gaps = 3/214 (1%)
Frame = -3
Query: 751 MAMATQASLFSPPLSG-RVSAPWKQSPTLSFTNTKPLKFTTS-PRTTTTTIRAADEKTEA 578
MAMATQASLF+P LS + SAPWKQS L+ + K LK T S PR IRA E+
Sbjct: 1 MAMATQASLFTPALSAPKSSAPWKQS--LASFSPKQLKSTVSAPRP----IRAMAEEA-- 52
Query: 577 PVATKEA-APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 401
ATKEA APVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT
Sbjct: 53 --ATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 110
Query: 400 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 221
GGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 111 GGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEK 170
Query: 220 VNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDV 119
VN GRQGVGQNFRSIGKN SPIEVKFTGKQ YD+
Sbjct: 171 VNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>pir||A1SP2 photosystem I chain II precursor - spinach gi|21289|emb|CAA32182.1|
subunit II preprotein (AA -50 to 162) [Spinacia
oleracea]
Length = 212
Score = 322 bits (824), Expect = 5e-87
Identities = 168/214 (78%), Positives = 176/214 (81%), Gaps = 3/214 (1%)
Frame = -3
Query: 751 MAMATQASLFSPPLSGRVSAPWKQSPTLSFTNTKPLKFTTSPRTTTTTIRAA---DEKTE 581
MAMATQA+LFSP S + P T SF L F + P + +IRAA + K
Sbjct: 1 MAMATQATLFSPS-SLSSAKPIDTRLTTSFKQPSALSFASKPASRHHSIRAAAAAEGKAA 59
Query: 580 APVATKEAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 401
P TKEA P GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPT
Sbjct: 60 TPTETKEA-PKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 118
Query: 400 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 221
GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEK
Sbjct: 119 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEK 178
Query: 220 VNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDV 119
VNPGRQGVG N RSIGKNVSPIEVKFTGKQPYD+
Sbjct: 179 VNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>pir||S37380 photosystem I chain II.D1 precursor - wood tobacco
gi|407769|dbj|BAA02871.1| PSI-D1 precursor [Nicotiana
sylvestris]
Length = 214
Score = 319 bits (817), Expect = 3e-86
Identities = 170/220 (77%), Positives = 183/220 (82%), Gaps = 9/220 (4%)
Frame = -3
Query: 751 MAMATQASLFSPPLSG------RVSAPWKQSPTLSFTNTKPLKFTTSPRTTTTTIRAADE 590
MAMA+QASLF+P +S RV APWKQS + SF+ K K + R A E
Sbjct: 1 MAMASQASLFTPSISTSKTADPRVVAPWKQSAS-SFSAPKLSKSVVAYRPIKAM---AVE 56
Query: 589 KTEAPVATKEA---APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQ 419
K ++ ATKEA APVGFTPP+LDP+TPSPIFGGSTGGLLRKAQV+EFYVITWESPKEQ
Sbjct: 57 KAQS--ATKEAEPAAPVGFTPPQLDPSTPSPIFGGSTGGLLRKAQVDEFYVITWESPKEQ 114
Query: 418 IFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKD 239
IFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKD
Sbjct: 115 IFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKD 174
Query: 238 GVYPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDV 119
GVYPEKVNPGRQGVGQNFRSIGKN SPIEVKFTGKQ YD+
Sbjct: 175 GVYPEKVNPGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDI 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 801,242,685
Number of Sequences: 1393205
Number of extensions: 22114138
Number of successful extensions: 206611
Number of sequences better than 10.0: 1943
Number of HSP's better than 10.0 without gapping: 85740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150894
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
