Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005357A_C01 KMC005357A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567297.1| F-box protein family, AtFBL9/AtFBL23; protein i... 93 2e-18
pir||H85068 N7-like protein [imported] - Arabidopsis thaliana gi... 84 1e-15
ref|NP_567295.1| F-box protein family, AtFBL21; protein id: At4g... 84 1e-15
emb|CAA76808.1| N7 protein [Medicago truncatula] 81 7e-15
pir||G85068 N7-like protein [imported] - Arabidopsis thaliana gi... 80 2e-14
>ref|NP_567297.1| F-box protein family, AtFBL9/AtFBL23; protein id: At4g05500.1
[Arabidopsis thaliana] gi|25407343|pir||B85069
hypothetical protein AT4g05500 [imported] - Arabidopsis
thaliana gi|5732066|gb|AAD48965.1|AF147263_7 contains
similarity to Medicago truncatula N7 protein (GB:Y17613)
[Arabidopsis thaliana] gi|7267310|emb|CAB81092.1|
contains similarity to Medicago truncatula N7 protein
(GB:Y17613)~similarity to~contains EST gb:AI998328.1
[Arabidopsis thaliana]
Length = 449
Score = 92.8 bits (229), Expect = 2e-18
Identities = 50/97 (51%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Frame = -1
Query: 550 CPLLKVLKLNMCPYPRFK---YDDEALAIARNMPNLHHLQLMGNWLTNYGLIFILDSRLH 380
CP LK LKLN P F +DD A AIA +MP L HLQL+GN LTN GL ILD H
Sbjct: 327 CPNLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPH 386
Query: 379 LESLNLKACKNIDLSGSLGERCYKQIREVHFS*DSSD 269
LE L+L+ C NI+L G L +RC+++I+++ DS D
Sbjct: 387 LEHLDLRQCFNINLVGDLKKRCFERIKDLRCPNDSDD 423
Score = 78.2 bits (191), Expect = 6e-14
Identities = 43/82 (52%), Positives = 55/82 (66%), Gaps = 3/82 (3%)
Frame = -1
Query: 508 PRFK---YDDEALAIARNMPNLHHLQLMGNWLTNYGLIFILDSRLHLESLNLKACKNIDL 338
PRFK YDDE LAIA MP L HL+L GN LTN L ILD+ +HL L+L+ C NI+L
Sbjct: 11 PRFKLWRYDDEPLAIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINL 70
Query: 337 SGSLGERCYKQIREVHFS*DSS 272
G L +RC ++IR++ DS+
Sbjct: 71 LGDLEKRCSERIRDLRRPDDST 92
>pir||H85068 N7-like protein [imported] - Arabidopsis thaliana
gi|7267308|emb|CAB81090.1| N7-like protein [Arabidopsis
thaliana]
Length = 322
Score = 84.0 bits (206), Expect = 1e-15
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 13/106 (12%)
Frame = -1
Query: 550 CPLLKVLKLNMCP------------YPRFKYDDEALAIARNMPNLHHLQLMGNWLTNYGL 407
CP LK LKLN P + DD+ALAIA +MP L HLQLMGN LTN GL
Sbjct: 182 CPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGL 241
Query: 406 IFILDSRLHLES-LNLKACKNIDLSGSLGERCYKQIREVHFS*DSS 272
ILD HLE L+++ C NI+L G+L +RC K+I+E+ DS+
Sbjct: 242 NAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKELRRPHDST 287
>ref|NP_567295.1| F-box protein family, AtFBL21; protein id: At4g05470.1 [Arabidopsis
thaliana]
Length = 576
Score = 84.0 bits (206), Expect = 1e-15
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 13/106 (12%)
Frame = -1
Query: 550 CPLLKVLKLNMCP------------YPRFKYDDEALAIARNMPNLHHLQLMGNWLTNYGL 407
CP LK LKLN P + DD+ALAIA +MP L HLQLMGN LTN GL
Sbjct: 182 CPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGL 241
Query: 406 IFILDSRLHLES-LNLKACKNIDLSGSLGERCYKQIREVHFS*DSS 272
ILD HLE L+++ C NI+L G+L +RC K+I+E+ DS+
Sbjct: 242 NAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKELRRPHDST 287
Score = 79.7 bits (195), Expect = 2e-14
Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 16/109 (14%)
Frame = -1
Query: 550 CPLLKVLKLNMCP--YPRF-KYD-------------DEALAIARNMPNLHHLQLMGNWLT 419
CP LK LKLN +P KYD D+ALAIA +MP LHHLQLM N LT
Sbjct: 460 CPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLT 519
Query: 418 NYGLIFILDSRLHLESLNLKACKNIDLSGSLGERCYKQIREVHFS*DSS 272
N GL ILD HLE L+++ C I L G+L +RC + I+E+ DS+
Sbjct: 520 NTGLNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKELRRPGDST 568
>emb|CAA76808.1| N7 protein [Medicago truncatula]
Length = 314
Score = 81.3 bits (199), Expect = 7e-15
Identities = 43/83 (51%), Positives = 53/83 (63%)
Frame = -1
Query: 550 CPLLKVLKLNMCPYPRFKYDDEALAIARNMPNLHHLQLMGNWLTNYGLIFILDSRLHLES 371
CPLLK+LK K D++A AIA MP L L + GN LTN GL+ ILD+ LE
Sbjct: 159 CPLLKLLKFKKKCCEDIKCDEDAFAIANTMPKLRLLMIFGNSLTNVGLLSILDACPLLED 218
Query: 370 LNLKACKNIDLSGSLGERCYKQI 302
L+L+ C N+DLSG LG+RC QI
Sbjct: 219 LDLRECLNLDLSGRLGKRCQDQI 241
>pir||G85068 N7-like protein [imported] - Arabidopsis thaliana
gi|7267307|emb|CAB81089.1| N7-like protein [Arabidopsis
thaliana]
Length = 304
Score = 79.7 bits (195), Expect = 2e-14
Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 16/109 (14%)
Frame = -1
Query: 550 CPLLKVLKLNMCP--YPRF-KYD-------------DEALAIARNMPNLHHLQLMGNWLT 419
CP LK LKLN +P KYD D+ALAIA +MP LHHLQLM N LT
Sbjct: 188 CPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLT 247
Query: 418 NYGLIFILDSRLHLESLNLKACKNIDLSGSLGERCYKQIREVHFS*DSS 272
N GL ILD HLE L+++ C I L G+L +RC + I+E+ DS+
Sbjct: 248 NTGLNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKELRRPGDST 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,227,816
Number of Sequences: 1393205
Number of extensions: 9296916
Number of successful extensions: 17668
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 17218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17658
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
