Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005354A_C01 KMC005354A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188246.1| putative 2Fe-2S iron-sulfur cluster protein; pr... 87 3e-18
ref|NP_567899.1| expressed protein; protein id: At4g32590.1 [Ara... 64 1e-09
ref|NP_682319.1| ORF_ID:tll1529~probable ferredoxin [Thermosynec... 59 3e-08
gb|AAL05047.1|AF410434_1 putative [2Fe-2S] ferredoxin [Anabaena ... 54 1e-06
ref|NP_484927.1| probable ferredoxin [2Fe-2S] [Nostoc sp. PCC 71... 54 1e-06
>ref|NP_188246.1| putative 2Fe-2S iron-sulfur cluster protein; protein id:
At3g16250.1, supported by cDNA: gi_14596158 [Arabidopsis
thaliana] gi|9279708|dbj|BAB01265.1|
gene_id:MYA6.6~unknown protein [Arabidopsis thaliana]
gi|14596159|gb|AAK68807.1| Unknown protein [Arabidopsis
thaliana]
Length = 204
Score = 86.7 bits (213), Expect(3) = 3e-18
Identities = 39/47 (82%), Positives = 41/47 (86%)
Frame = -2
Query: 507 TCATCMVEVLEGTELLNPRTDKEKEKLKRKPKNWRLACPTPVGEPDS 367
TCATCMVE++ G ELLNPRTD EKEKLKRKPKNWRLAC T VG PDS
Sbjct: 125 TCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDS 171
Score = 24.6 bits (52), Expect(3) = 3e-18
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = -3
Query: 377 NQIQTGVVVIQQLPE 333
N TG+VVIQQLPE
Sbjct: 168 NPDSTGLVVIQQLPE 182
Score = 21.2 bits (43), Expect(3) = 3e-18
Identities = 6/10 (60%), Positives = 6/10 (60%)
Frame = -1
Query: 331 WKGHEWKYEK 302
WK HEW K
Sbjct: 183 WKAHEWNIPK 192
>ref|NP_567899.1| expressed protein; protein id: At4g32590.1 [Arabidopsis thaliana]
gi|15028325|gb|AAK76639.1| unknown protein [Arabidopsis
thaliana] gi|22136786|gb|AAM91737.1| unknown protein
[Arabidopsis thaliana]
Length = 173
Score = 63.5 bits (153), Expect = 1e-09
Identities = 26/48 (54%), Positives = 37/48 (76%)
Frame = -2
Query: 507 TCATCMVEVLEGTELLNPRTDKEKEKLKRKPKNWRLACPTPVGEPDSN 364
+C TC+VE+L+G +LLN RTD E LK+KP++WRLAC T VG +++
Sbjct: 113 SCGTCIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKENS 160
>ref|NP_682319.1| ORF_ID:tll1529~probable ferredoxin [Thermosynechococcus elongatus
BP-1] gi|22295254|dbj|BAC09081.1|
ORF_ID:tll1529~probable ferredoxin [Thermosynechococcus
elongatus BP-1]
Length = 108
Score = 58.9 bits (141), Expect = 3e-08
Identities = 27/46 (58%), Positives = 35/46 (75%)
Frame = -2
Query: 504 CATCMVEVLEGTELLNPRTDKEKEKLKRKPKNWRLACPTPVGEPDS 367
C TC+VE++EG E L+PRT E+ KL+RKP+N+RLAC T V P S
Sbjct: 56 CGTCIVEIVEGMEHLSPRTPVEERKLRRKPENYRLACQTLVYGPVS 101
>gb|AAL05047.1|AF410434_1 putative [2Fe-2S] ferredoxin [Anabaena variabilis]
Length = 99
Score = 53.5 bits (127), Expect = 1e-06
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = -2
Query: 504 CATCMVEVLEGTELLNPRTDKEKEKLKRKPKNWRLACPTPVGEPDS 367
C TC+VE++EG E L+ TD E LK+KP N+RLAC T V P S
Sbjct: 48 CGTCIVEIVEGIENLSTPTDVENRMLKKKPANYRLACQTLVNGPVS 93
>ref|NP_484927.1| probable ferredoxin [2Fe-2S] [Nostoc sp. PCC 7120]
gi|25282668|pir||AI1916 hypothetical protein asl0884
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130229|dbj|BAB72841.1| ORF_ID:asl0884~probable
ferredoxin [2Fe-2S] [Nostoc sp. PCC 7120]
Length = 98
Score = 53.5 bits (127), Expect = 1e-06
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = -2
Query: 504 CATCMVEVLEGTELLNPRTDKEKEKLKRKPKNWRLACPTPVGEPDS 367
C TC+VE++EG E L+ TD E LK+KP N+RLAC T V P S
Sbjct: 48 CGTCIVEIVEGIENLSTPTDVENRMLKKKPANYRLACQTLVNGPVS 93
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,877,863
Number of Sequences: 1393205
Number of extensions: 8430809
Number of successful extensions: 19978
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 19565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19970
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
