Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005344A_C01 KMC005344A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZTN2|ERD2_PETHY ER lumen protein retaining receptor (HDEL r... 207 5e-53
gb|AAM64352.1| ER lumen retaining receptor (HDEL receptor), puta... 199 1e-50
ref|NP_566758.1| ER lumen retaining receptor (HDEL receptor), pu... 196 1e-49
dbj|BAB01889.1| ER lumen protein-retaining receptor-like protein... 191 4e-48
ref|NP_564326.1| ER lumen protein retaining receptor; protein id... 173 1e-42
>sp|Q9ZTN2|ERD2_PETHY ER lumen protein retaining receptor (HDEL receptor) (PGP169-12)
gi|4105782|gb|AAD02548.1| PGPS/D6 [Petunia x hybrida]
Length = 215
Score = 207 bits (528), Expect = 5e-53
Identities = 93/104 (89%), Positives = 99/104 (94%)
Frame = -1
Query: 548 NEKFTFKEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGPYVFLLGAYRALYILNWIYR 369
NEKFTFKEVMW FS+YLEAVAILPQLVLLQRTRNIDNLTG Y+FLLGAYR+ YILNW+YR
Sbjct: 112 NEKFTFKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGAYRSFYILNWVYR 171
Query: 368 YFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNQKLHLPA 237
YFTEPHFVHWITWI+GL+QTLLYADFFYYYFQSWKNN KL LPA
Sbjct: 172 YFTEPHFVHWITWIAGLIQTLLYADFFYYYFQSWKNNTKLELPA 215
>gb|AAM64352.1| ER lumen retaining receptor (HDEL receptor), putative [Arabidopsis
thaliana]
Length = 215
Score = 199 bits (507), Expect = 1e-50
Identities = 91/104 (87%), Positives = 96/104 (91%)
Frame = -1
Query: 548 NEKFTFKEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGPYVFLLGAYRALYILNWIYR 369
+EKFTF EV+W FSLYLEAVAILPQLVLLQRTRNIDNLTG Y+FLLG YR LYILNWIYR
Sbjct: 112 HEKFTFLEVLWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGGYRGLYILNWIYR 171
Query: 368 YFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNQKLHLPA 237
YFTEPHFVHWITWI+G VQTLLYADFFYYYF SWKNN+KL LPA
Sbjct: 172 YFTEPHFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLPA 215
>ref|NP_566758.1| ER lumen retaining receptor (HDEL receptor), putative; protein id:
At3g25040.1, supported by cDNA: 23341., supported by
cDNA: gi_17380929 [Arabidopsis thaliana]
gi|17380930|gb|AAL36277.1| putative ER lumen-retaining
receptor (HDEL receptor) protein [Arabidopsis thaliana]
gi|18369697|emb|CAC81064.1| endoplasmic reticulum
retrieval receptor 2 [Arabidopsis thaliana]
gi|23296793|gb|AAN13171.1| putative ER lumen-retaining
receptor (HDEL receptor) protein [Arabidopsis thaliana]
Length = 215
Score = 196 bits (499), Expect = 1e-49
Identities = 90/104 (86%), Positives = 95/104 (90%)
Frame = -1
Query: 548 NEKFTFKEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGPYVFLLGAYRALYILNWIYR 369
+EKFTF EV+W SLYLEAVAILPQLVLLQRTRNIDNLTG Y+FLLG YR LYILNWIYR
Sbjct: 112 HEKFTFLEVLWTSSLYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGGYRGLYILNWIYR 171
Query: 368 YFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNQKLHLPA 237
YFTEPHFVHWITWI+G VQTLLYADFFYYYF SWKNN+KL LPA
Sbjct: 172 YFTEPHFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLPA 215
>dbj|BAB01889.1| ER lumen protein-retaining receptor-like protein [Arabidopsis
thaliana]
Length = 217
Score = 191 bits (486), Expect = 4e-48
Identities = 90/106 (84%), Positives = 95/106 (88%), Gaps = 2/106 (1%)
Frame = -1
Query: 548 NEKFTFKEV--MWAFSLYLEAVAILPQLVLLQRTRNIDNLTGPYVFLLGAYRALYILNWI 375
+EKFTF EV +W SLYLEAVAILPQLVLLQRTRNIDNLTG Y+FLLG YR LYILNWI
Sbjct: 112 HEKFTFLEVCVLWTSSLYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGGYRGLYILNWI 171
Query: 374 YRYFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNQKLHLPA 237
YRYFTEPHFVHWITWI+G VQTLLYADFFYYYF SWKNN+KL LPA
Sbjct: 172 YRYFTEPHFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLPA 217
>ref|NP_564326.1| ER lumen protein retaining receptor; protein id: At1g29330.1,
supported by cDNA: gi_20260681 [Arabidopsis thaliana]
gi|544250|sp|P35402|ERD2_ARATH ER lumen protein
retaining receptor (HDEL receptor) gi|541860|pir||A49677
endoplasmic reticulum retention receptor Erd2 -
Arabidopsis thaliana gi|9502409|gb|AAF88108.1|AC021043_1
endoplasmic reticulum retention receptor Erd2
[Arabidopsis thaliana]
gi|12323512|gb|AAG51724.1|AC068667_3 ER lumen protein
retaining receptor; 3333-1007 [Arabidopsis thaliana]
gi|20260682|gb|AAM13239.1| ER lumen protein retaining
receptor; 3333-1007 [Arabidopsis thaliana]
Length = 215
Score = 173 bits (438), Expect = 1e-42
Identities = 80/104 (76%), Positives = 87/104 (82%)
Frame = -1
Query: 548 NEKFTFKEVMWAFSLYLEAVAILPQLVLLQRTRNIDNLTGPYVFLLGAYRALYILNWIYR 369
NEKFT +EV WAFS+YLEAVAILPQLVLLQR+ N+DNLTG YV LGAYR LYI+NWIYR
Sbjct: 112 NEKFTVQEVFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVVFLGAYRGLYIINWIYR 171
Query: 368 YFTEPHFVHWITWISGLVQTLLYADFFYYYFQSWKNNQKLHLPA 237
YFTE HF WI +SGLVQT LYADFFYYY+ SWK N KL LPA
Sbjct: 172 YFTEDHFTRWIACVSGLVQTALYADFFYYYYISWKTNTKLKLPA 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,878,284
Number of Sequences: 1393205
Number of extensions: 9544923
Number of successful extensions: 23220
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 22643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23160
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
