Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005336A_C01 KMC005336A_c01
(872 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA10134.1| basic blue copper protein [Cicer arietinum] 162 5e-39
pdb|2CBP| Cucumber Basic Protein, A Blue Copper Protein 150 2e-35
sp|P00303|BABL_CUCSA Basic blue protein (Cusacyanin) (Plantacyan... 150 3e-35
gb|AAK38502.1|AC087181_18 putative basic protein [Oryza sativa] 147 2e-34
gb|AAM60981.1| putative basic blue protein plantacyanin [Arabido... 145 8e-34
>emb|CAA10134.1| basic blue copper protein [Cicer arietinum]
Length = 122
Score = 162 bits (411), Expect = 5e-39
Identities = 79/130 (60%), Positives = 91/130 (69%)
Frame = -1
Query: 803 MTEGRGSASLPTVVVTVGISLLCLLALQVEHANAATYTVGGPAGWSFNTDTWPNGKKFRA 624
M GRGSA + + L+C L + E A AA YTVGG GW+FNT WPNGK F+A
Sbjct: 1 MALGRGSALV--------VLLVCFLVIHSELAQAAIYTVGGAGGWTFNTIAWPNGKNFKA 52
Query: 623 GDVLIFNYDSTTHNVVAVDQSGYKSCTTPAGAKVLSSGKDQIRLGRGQNYFICNCPGHCP 444
GD L+FNY HNVVAV ++GY SC TP GAKV SGKDQIRL RGQNYFICN GHC
Sbjct: 53 GDTLVFNYSPGAHNVVAVSKAGYGSCKTPRGAKVYRSGKDQIRLARGQNYFICNYVGHCE 112
Query: 443 SGMKVAIHAL 414
SGMK+AI+A+
Sbjct: 113 SGMKIAINAV 122
>pdb|2CBP| Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 150 bits (379), Expect = 2e-35
Identities = 62/96 (64%), Positives = 81/96 (83%)
Frame = -1
Query: 701 ATYTVGGPAGWSFNTDTWPNGKKFRAGDVLIFNYDSTTHNVVAVDQSGYKSCTTPAGAKV 522
A Y VGG GW+FNT++WP GK+FRAGD+L+FNY+ + HNVV V+Q G+ +C TPAGAKV
Sbjct: 1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 521 LSSGKDQIRLGRGQNYFICNCPGHCPSGMKVAIHAL 414
+SG+DQI+L +GQ+YFICN PGHC SGMK+A++AL
Sbjct: 61 YTSGRDQIKLPKGQSYFICNFPGHCQSGMKIAVNAL 96
>sp|P00303|BABL_CUCSA Basic blue protein (Cusacyanin) (Plantacyanin) (CBP)
gi|65850|pir||BUKV basic blue protein [validated] -
cucumber gi|223531|prf||0811264A protein,blue
Length = 96
Score = 150 bits (378), Expect = 3e-35
Identities = 62/96 (64%), Positives = 80/96 (82%)
Frame = -1
Query: 701 ATYTVGGPAGWSFNTDTWPNGKKFRAGDVLIFNYDSTTHNVVAVDQSGYKSCTTPAGAKV 522
A Y VGG GW+FNT++WP GK+FRAGD+L+FNY+ HNVV V+Q G+ +C TPAGAKV
Sbjct: 1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 521 LSSGKDQIRLGRGQNYFICNCPGHCPSGMKVAIHAL 414
+SG+DQI+L +GQ+YFICN PGHC SGMK+A++AL
Sbjct: 61 YTSGRDQIKLPKGQSYFICNFPGHCQSGMKIAVNAL 96
>gb|AAK38502.1|AC087181_18 putative basic protein [Oryza sativa]
Length = 129
Score = 147 bits (372), Expect = 2e-34
Identities = 70/129 (54%), Positives = 89/129 (68%)
Frame = -1
Query: 803 MTEGRGSASLPTVVVTVGISLLCLLALQVEHANAATYTVGGPAGWSFNTDTWPNGKKFRA 624
M +GRGSA+ + + LLC+L L E A +A YTVG GW FN+ W GK+FRA
Sbjct: 1 MAQGRGSAAGRRNAAVLAMVLLCVL-LHGELAESAVYTVGDRGGWGFNSGGWLRGKRFRA 59
Query: 623 GDVLIFNYDSTTHNVVAVDQSGYKSCTTPAGAKVLSSGKDQIRLGRGQNYFICNCPGHCP 444
GDVL+F Y + HNVVAV+ +GYKSC+ P GAKV SG D++ L RG NYFIC+ PGHC
Sbjct: 60 GDVLVFKYSPSAHNVVAVNAAGYKSCSAPRGAKVYKSGSDRVTLARGTNYFICSFPGHCQ 119
Query: 443 SGMKVAIHA 417
+GMK+A+ A
Sbjct: 120 AGMKIAVTA 128
>gb|AAM60981.1| putative basic blue protein plantacyanin [Arabidopsis thaliana]
Length = 129
Score = 145 bits (366), Expect = 8e-34
Identities = 69/130 (53%), Positives = 87/130 (66%)
Frame = -1
Query: 803 MTEGRGSASLPTVVVTVGISLLCLLALQVEHANAATYTVGGPAGWSFNTDTWPNGKKFRA 624
M +GRGSAS + V + + +L LQ ++ AATYTVG W+FN WP GK FRA
Sbjct: 1 MAKGRGSASWSARAI-VTLMAVSVLLLQADYVQAATYTVGDSGIWTFNAVGWPKGKHFRA 59
Query: 623 GDVLIFNYDSTTHNVVAVDQSGYKSCTTPAGAKVLSSGKDQIRLGRGQNYFICNCPGHCP 444
GDVL+FNY+ HNVV VD Y +C TP GAK +SGKD+I L +GQN+FICN P HC
Sbjct: 60 GDVLVFNYNPRMHNVVXVDSGSYNNCKTPTGAKPYTSGKDRITLSKGQNFFICNFPNHCE 119
Query: 443 SGMKVAIHAL 414
S MK+A+ A+
Sbjct: 120 SDMKIAVTAV 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 780,339,785
Number of Sequences: 1393205
Number of extensions: 18239021
Number of successful extensions: 38083
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 36017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37859
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46824663816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
