Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005324A_C01 KMC005324A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC26377.1| unnamed protein product [Mus musculus] 32 8.5
dbj|BAC34496.1| unnamed protein product [Mus musculus] 32 8.5
sp|O54786|DFFA_MOUSE DNA fragmentation factor alpha subunit (DNA... 32 8.5
ref|NP_034174.1| DNA fragmentation factor, alpha subunit [Mus mu... 32 8.5
dbj|BAC30285.1| unnamed protein product [Mus musculus] 32 8.5
>dbj|BAC26377.1| unnamed protein product [Mus musculus]
Length = 704
Score = 31.6 bits (70), Expect = 8.5
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 497 PIGGSQGVKELEADILPTVSLSFGMRTSDPEDNNPL 390
P+ G++ KEL+ D L +S S G R DP++N PL
Sbjct: 551 PLPGTEKDKELD-DALDELSDSLGQRPPDPDENKPL 585
>dbj|BAC34496.1| unnamed protein product [Mus musculus]
Length = 331
Score = 31.6 bits (70), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 443 VSLSFGMRTSDPEDNNPLQPCIA----GRDQSGVIIRSSE 336
+ LS G DP+D PL+PC+ RDQ GV S E
Sbjct: 1 MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHGVAASSLE 40
>sp|O54786|DFFA_MOUSE DNA fragmentation factor alpha subunit (DNA fragmentation factor 45
kDa subunit) (DFF-45) (Inhibitor of CAD) (ICAD)
gi|2754586|dbj|BAA24140.1| ICAD-L [Mus musculus]
Length = 331
Score = 31.6 bits (70), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 443 VSLSFGMRTSDPEDNNPLQPCIA----GRDQSGVIIRSSE 336
+ LS G DP+D PL+PC+ RDQ GV S E
Sbjct: 1 MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHGVAASSLE 40
>ref|NP_034174.1| DNA fragmentation factor, alpha subunit [Mus musculus]
gi|2754588|dbj|BAA24141.1| ICAD-S [Mus musculus]
Length = 265
Score = 31.6 bits (70), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 443 VSLSFGMRTSDPEDNNPLQPCIA----GRDQSGVIIRSSE 336
+ LS G DP+D PL+PC+ RDQ GV S E
Sbjct: 1 MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHGVAASSLE 40
>dbj|BAC30285.1| unnamed protein product [Mus musculus]
Length = 265
Score = 31.6 bits (70), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 443 VSLSFGMRTSDPEDNNPLQPCIA----GRDQSGVIIRSSE 336
+ LS G DP+D PL+PC+ RDQ GV S E
Sbjct: 1 MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHGVAASSLE 40
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,399,496
Number of Sequences: 1393205
Number of extensions: 10281154
Number of successful extensions: 22110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22106
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
