Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005320A_C01 KMC005320A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana] 267 1e-70
ref|NP_191049.1| light-harvesting chlorophyll a/b binding protei... 267 1e-70
pir||S28827 chlorophyll a/b-binding protein type I - common toba... 266 2e-70
pir||S00443 chlorophyll a/b-binding protein type I precursor (ca... 263 1e-69
sp|P12360|CB11_LYCES Chlorophyll A-B binding protein 6A, chlorop... 257 8e-68
>gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 267 bits (682), Expect = 1e-70
Identities = 123/132 (93%), Positives = 128/132 (96%)
Frame = -2
Query: 633 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKY 454
G GNWVKAQEWAALPGGQATYLGNPVPWGTLPT+LAIEFLAI+FVEHQRSMEKDPEKKKY
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKY 167
Query: 453 PGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 274
PGGAFDPLGYSKDPKK E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD
Sbjct: 168 PGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 227
Query: 273 PWHNNIGNVLIP 238
PWHNNIG+++IP
Sbjct: 228 PWHNNIGDIVIP 239
>ref|NP_191049.1| light-harvesting chlorophyll a/b binding protein; protein id:
At3g54890.1, supported by cDNA: gi_12642855, supported
by cDNA: gi_13265500, supported by cDNA: gi_13358207,
supported by cDNA: gi_13605731, supported by cDNA:
gi_20453134 [Arabidopsis thaliana] gi|282865|pir||S25435
chlorophyll a/b-binding protein F28P10.130 - Arabidopsis
thaliana gi|16207|emb|CAA39534.1| chlorophyll
A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding
protein [Arabidopsis thaliana]
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890
[Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1
AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130
[Arabidopsis thaliana] gi|20453135|gb|AAM19809.1|
AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130
[Arabidopsis thaliana]
Length = 241
Score = 267 bits (682), Expect = 1e-70
Identities = 123/132 (93%), Positives = 128/132 (96%)
Frame = -2
Query: 633 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKY 454
G GNWVKAQEWAALPGGQATYLGNPVPWGTLPT+LAIEFLAI+FVEHQRSMEKDPEKKKY
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKY 167
Query: 453 PGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 274
PGGAFDPLGYSKDPKK E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD
Sbjct: 168 PGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 227
Query: 273 PWHNNIGNVLIP 238
PWHNNIG+++IP
Sbjct: 228 PWHNNIGDIVIP 239
>pir||S28827 chlorophyll a/b-binding protein type I - common tobacco
gi|493723|emb|CAA45523.1| photosystem I light-harvesting
chlorophyll a/b-binding protein [Nicotiana tabacum]
Length = 245
Score = 266 bits (680), Expect = 2e-70
Identities = 123/131 (93%), Positives = 128/131 (96%)
Frame = -2
Query: 633 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKY 454
GLGNWVKAQEWAA+PGGQATYLG PVPWGTLPT+LAIEFLAI+FVEHQRSMEKDPEKKKY
Sbjct: 109 GLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKY 168
Query: 453 PGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 274
PGGAFDPLGYSKDPKKF E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD
Sbjct: 169 PGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
Query: 273 PWHNNIGNVLI 241
PWHNNIG+V+I
Sbjct: 229 PWHNNIGDVII 239
Score = 31.6 bits (70), Expect = 9.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 441 FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQS 325
FDPLG + P YK E+ + R A+LA G V ++
Sbjct: 69 FDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEA 107
>pir||S00443 chlorophyll a/b-binding protein type I precursor (cab-6A) - tomato
gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 263 bits (673), Expect = 1e-69
Identities = 122/132 (92%), Positives = 127/132 (95%)
Frame = -2
Query: 633 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKY 454
GLGNWVKAQEWAA+PGGQATYLG PVPWGTLPT+LAIEFLAI+FVEHQRSMEKD EKKKY
Sbjct: 109 GLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKY 168
Query: 453 PGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 274
PGGAFDPLGYSKDP KF E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD
Sbjct: 169 PGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 228
Query: 273 PWHNNIGNVLIP 238
PWHNNIG+V+IP
Sbjct: 229 PWHNNIGDVIIP 240
>sp|P12360|CB11_LYCES Chlorophyll A-B binding protein 6A, chloroplast precursor (LHCI
type I CAB-6A) (Light-harvesting complex I 26 kDa
protein) gi|170494|gb|AAA34186.1| chlorophyll a/b
binding protein precursor
Length = 246
Score = 257 bits (657), Expect = 8e-68
Identities = 120/132 (90%), Positives = 125/132 (93%)
Frame = -2
Query: 633 GLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKKY 454
GLGNWVKAQEWAA+PGGQATYLG PVPWGTLPT+LAIEFLAI+FVEHQRSMEKD EKKKY
Sbjct: 109 GLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKY 168
Query: 453 PGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 274
PGGAFDPLGYSKDP KF E KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLAD
Sbjct: 169 PGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLAD 228
Query: 273 PWHNNIGNVLIP 238
PWHNNIG+V+IP
Sbjct: 229 PWHNNIGDVIIP 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 623,737,078
Number of Sequences: 1393205
Number of extensions: 14763870
Number of successful extensions: 43118
Number of sequences better than 10.0: 409
Number of HSP's better than 10.0 without gapping: 41112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42758
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
