Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005313A_C02 KMC005313A_c02
(825 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA10290.1| ribulose 1,5-bisphosphate carboxylase small subu... 310 2e-83
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain... 298 9e-80
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain... 297 1e-79
gb|AAG24884.1|AF303941_1 ribulose-1,5-bisphosphate carboxylase s... 294 9e-79
gb|AAA81328.1| ribulose-1,5-bisphosphate carboxylase small subun... 294 9e-79
>emb|CAA10290.1| ribulose 1,5-bisphosphate carboxylase small subunit [Cicer
arietinum]
Length = 181
Score = 310 bits (793), Expect = 2e-83
Identities = 147/173 (84%), Positives = 156/173 (89%)
Frame = -3
Query: 823 MASSMITSSAVTTINSASPAQANMVAPFTGLKSMAGFPVRKVNNDITSIANNGGRVQCMQ 644
MASSMI+SSAVTT+ AS + VAPF GLKSMAGFPVRKVNNDITSIA+NGGRV CMQ
Sbjct: 1 MASSMISSSAVTTVKRASSVPSGAVAPFVGLKSMAGFPVRKVNNDITSIASNGGRVHCMQ 60
Query: 643 VWPPIGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 464
VWPPIGKKKFETLSYLPPLT EQLLKEVEYLLRKGWVPCLEFE EKGFVYRE++ SPGYY
Sbjct: 61 VWPPIGKKKFETLSYLPPLTEEQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNNSPGYY 120
Query: 463 DGRYWTMWKLPMFGCSDATQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCTQF 305
DGRYWTMWKLP+FGC++A QVLKEL E VKAYPNAFVRIIGFDNVRQVQC F
Sbjct: 121 DGRYWTMWKLPLFGCTEAVQVLKELQEVVKAYPNAFVRIIGFDNVRQVQCISF 173
>sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain 3A, chloroplast
precursor (RuBisCO small subunit 3A)
gi|68083|pir||RKPMS3 ribulose-bisphosphate carboxylase
(EC 4.1.1.39) small chain 3A precursor - garden pea
gi|20855|emb|CAA27864.1| ribulose bisphosphate
carboxylase [Pisum sativum] gi|225288|prf||1211236A
carboxylase,ribulose bisphosphate
Length = 180
Score = 298 bits (762), Expect = 9e-80
Identities = 141/171 (82%), Positives = 154/171 (89%)
Frame = -3
Query: 817 SSMITSSAVTTINSASPAQANMVAPFTGLKSMAGFPVRKVNNDITSIANNGGRVQCMQVW 638
+SMI+SSAVTT++ AS Q+ VAPF GLKSM GFPV+KVN DITSI +NGGRV+CMQVW
Sbjct: 2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPVKKVNTDITSITSNGGRVKCMQVW 61
Query: 637 PPIGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDG 458
PPIGKKKFETLSYLPPLT +QLLKEVEYLLRKGWVPCLEFE EKGFVYRE++KSPGYYDG
Sbjct: 62 PPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDG 121
Query: 457 RYWTMWKLPMFGCSDATQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCTQF 305
RYWTMWKLPMFG +DA+QVLKELDE V AYP AFVRIIGFDNVRQVQC F
Sbjct: 122 RYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172
>sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain 3C, chloroplast
precursor (RuBisCO small subunit 3C) (PSS15)
gi|68082|pir||RKPMS5 ribulose-bisphosphate carboxylase
(EC 4.1.1.39) small chain 3C precursor - garden pea
gi|20857|emb|CAA27865.1| ribulose 1.5-bisphosphate
carboxylase (RBC) [Pisum sativum]
gi|20859|emb|CAA25390.1| ribulose bisphosphate
carboxylase [Pisum sativum] gi|225289|prf||1211236B
carboxylase,ribulose bisphosphate
Length = 180
Score = 297 bits (761), Expect = 1e-79
Identities = 141/171 (82%), Positives = 154/171 (89%)
Frame = -3
Query: 817 SSMITSSAVTTINSASPAQANMVAPFTGLKSMAGFPVRKVNNDITSIANNGGRVQCMQVW 638
+SMI+SSAVTT++ AS Q+ VAPF GLKSM GFPV+KVN DITSI +NGGRV+CMQVW
Sbjct: 2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPVKKVNTDITSITSNGGRVKCMQVW 61
Query: 637 PPIGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDG 458
PPIGKKKFETLSYLPPLT +QLLKEVEYLLRKGWVPCLEFE EKGFVYRE++KSPGYYDG
Sbjct: 62 PPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDG 121
Query: 457 RYWTMWKLPMFGCSDATQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCTQF 305
RYWTMWKLPMFG +DA+QVLKELDE V AYP AFVRIIGFDNVRQVQC F
Sbjct: 122 RYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172
>gb|AAG24884.1|AF303941_1 ribulose-1,5-bisphosphate carboxylase small subunit rbcS3 [Glycine
max]
Length = 178
Score = 294 bits (753), Expect = 9e-79
Identities = 140/173 (80%), Positives = 151/173 (86%)
Frame = -3
Query: 823 MASSMITSSAVTTINSASPAQANMVAPFTGLKSMAGFPVRKVNNDITSIANNGGRVQCMQ 644
MASSMI+S AVTT+N A A MVAPFTGLKSMAGFP RK NNDITSIA+NGGRVQCMQ
Sbjct: 1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57
Query: 643 VWPPIGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 464
VWPP+GKKKFETLSYLP L QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYY
Sbjct: 58 VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 117
Query: 463 DGRYWTMWKLPMFGCSDATQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCTQF 305
DGRYWTMWKLPMFGC+DA+QVLKEL EA AYPN F+RIIGFDNVRQVQC F
Sbjct: 118 DGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170
>gb|AAA81328.1| ribulose-1,5-bisphosphate carboxylase small subunit [Glycine max]
gi|10946375|gb|AAG24882.1|AF303939_1
ribulose-1,5-bisphosphate carboxylase small subunit
rbcS1 [Glycine max]
Length = 178
Score = 294 bits (753), Expect = 9e-79
Identities = 140/173 (80%), Positives = 151/173 (86%)
Frame = -3
Query: 823 MASSMITSSAVTTINSASPAQANMVAPFTGLKSMAGFPVRKVNNDITSIANNGGRVQCMQ 644
MASSMI+S AVTT+N A A MVAPFTGLKSMAGFP RK NNDITSIA+NGGRVQCMQ
Sbjct: 1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57
Query: 643 VWPPIGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 464
VWPP+GKKKFETLSYLP L QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYY
Sbjct: 58 VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 117
Query: 463 DGRYWTMWKLPMFGCSDATQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCTQF 305
DGRYWTMWKLPMFGC+DA+QVLKEL EA AYPN F+RIIGFDNVRQVQC F
Sbjct: 118 DGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 800,370,060
Number of Sequences: 1393205
Number of extensions: 19474597
Number of successful extensions: 57183
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 52726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56595
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
