Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005306A_C01 KMC005306A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61103.1| unknown [Arabidopsis thaliana] 112 3e-24
ref|NP_564507.1| expressed protein; protein id: At1g47480.1, sup... 112 6e-24
gb|AAL57633.1| AT3g48690/T8P19_200 [Arabidopsis thaliana] 103 2e-21
ref|NP_190438.1| putative protein; protein id: At3g48690.1, supp... 103 2e-21
ref|NP_178453.1| putative esterase; protein id: At2g03550.1 [Ara... 96 4e-19
>gb|AAM61103.1| unknown [Arabidopsis thaliana]
Length = 314
Score = 112 bits (281), Expect = 3e-24
Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Frame = -1
Query: 619 VRIEGLVYVHPYFWGGERIGKEGDRPEYVQKVHDLWRFSYPTTSGSDDPLLNPAKD--PN 446
V+I+G+ +HPYFWG + IG E Q V W F P+ GSDDP +NP D P+
Sbjct: 178 VKIKGIGMIHPYFWGTQPIGAEIKDEAMKQMVDGWWEFVCPSKKGSDDPWINPFADGSPD 237
Query: 445 LGKLACGRVLVCVAGNDLLRDRGWYYQDLLEKIGWSGEVEVLEAKDEEHVFHMFKP 278
LG L C RV++ VA D+L +RG Y + L K W G+VE++E K+++HVFH+F+P
Sbjct: 238 LGGLGCERVMITVAEKDILNERGKMYFERLVKSEWKGKVEIMETKEKDHVFHIFEP 293
>ref|NP_564507.1| expressed protein; protein id: At1g47480.1, supported by cDNA:
111056. [Arabidopsis thaliana] gi|25405208|pir||A96515
hypothetical protein F16N3.25 [imported] - Arabidopsis
thaliana gi|5668813|gb|AAD46039.1|AC007519_24 Similar to
gb|X77136 HSR203J protein from Nicotiana tabacum and is
a member of the PF|00135 Carboxylesterase family. ESTs
gb|Z25688 and gb|F14025 come from this gene.
[Arabidopsis thaliana]
Length = 314
Score = 112 bits (279), Expect = 6e-24
Identities = 52/116 (44%), Positives = 74/116 (62%), Gaps = 2/116 (1%)
Frame = -1
Query: 619 VRIEGLVYVHPYFWGGERIGKEGDRPEYVQKVHDLWRFSYPTTSGSDDPLLNPAKD--PN 446
++I+G+ +HPYFWG + IG E Q V W F P+ GSDDP +NP D P+
Sbjct: 178 LKIKGIGMIHPYFWGTQPIGAEIKDEARKQMVDGWWEFVCPSEKGSDDPWINPFADGSPD 237
Query: 445 LGKLACGRVLVCVAGNDLLRDRGWYYQDLLEKIGWSGEVEVLEAKDEEHVFHMFKP 278
LG L C RV++ VA D+L +RG Y + L K W G+VE++E K+++HVFH+F+P
Sbjct: 238 LGGLGCERVMITVAEKDILNERGKMYYERLVKSEWKGKVEIMETKEKDHVFHIFEP 293
>gb|AAL57633.1| AT3g48690/T8P19_200 [Arabidopsis thaliana]
Length = 324
Score = 103 bits (256), Expect(2) = 2e-21
Identities = 52/122 (42%), Positives = 75/122 (60%), Gaps = 4/122 (3%)
Frame = -1
Query: 631 GFDGVRIEGLVYVHPYFWGGERIGKEGDRPEYVQ-KVHDLWRFSYPTTS-GSDDPLLN-- 464
G + I G++ +HPYFW I ++ + E ++ K+ W + P + G+DDPLLN
Sbjct: 183 GLNDTGISGIILLHPYFWSKTPIDEKDTKDETLRMKIEAFWMMASPNSKDGTDDPLLNVV 242
Query: 463 PAKDPNLGKLACGRVLVCVAGNDLLRDRGWYYQDLLEKIGWSGEVEVLEAKDEEHVFHMF 284
++ +L L CG+VLV VA D L +GW Y LEK GW GEVEV+E++ E+HVFH+
Sbjct: 243 QSESVDLSGLGCGKVLVMVAEKDALVRQGWGYAAKLEKSGWKGEVEVVESEGEDHVFHLL 302
Query: 283 KP 278
KP
Sbjct: 303 KP 304
Score = 21.2 bits (43), Expect(2) = 2e-21
Identities = 7/18 (38%), Positives = 12/18 (65%)
Frame = -2
Query: 279 PHCENAMVLLYPVVSFIK 226
P C+NA+ +++ FIK
Sbjct: 304 PECDNAIEVMHKFSGFIK 321
>ref|NP_190438.1| putative protein; protein id: At3g48690.1, supported by cDNA:
gi_18086340 [Arabidopsis thaliana]
gi|11279652|pir||T46213 hypothetical protein T8P19.200 -
Arabidopsis thaliana gi|6523100|emb|CAB62358.1| putative
protein [Arabidopsis thaliana]
Length = 324
Score = 103 bits (256), Expect(2) = 2e-21
Identities = 52/122 (42%), Positives = 75/122 (60%), Gaps = 4/122 (3%)
Frame = -1
Query: 631 GFDGVRIEGLVYVHPYFWGGERIGKEGDRPEYVQ-KVHDLWRFSYPTTS-GSDDPLLN-- 464
G + I G++ +HPYFW I ++ + E ++ K+ W + P + G+DDPLLN
Sbjct: 183 GLNDTGISGIILLHPYFWSKTPIDEKDTKDETLRMKIEAFWMMASPNSKDGTDDPLLNVV 242
Query: 463 PAKDPNLGKLACGRVLVCVAGNDLLRDRGWYYQDLLEKIGWSGEVEVLEAKDEEHVFHMF 284
++ +L L CG+VLV VA D L +GW Y LEK GW GEVEV+E++ E+HVFH+
Sbjct: 243 QSESVDLSGLGCGKVLVMVAEKDALVRQGWGYAAKLEKSGWKGEVEVVESEGEDHVFHLL 302
Query: 283 KP 278
KP
Sbjct: 303 KP 304
Score = 21.2 bits (43), Expect(2) = 2e-21
Identities = 7/18 (38%), Positives = 12/18 (65%)
Frame = -2
Query: 279 PHCENAMVLLYPVVSFIK 226
P C+NA+ +++ FIK
Sbjct: 304 PECDNAIEVMHKFSGFIK 321
>ref|NP_178453.1| putative esterase; protein id: At2g03550.1 [Arabidopsis thaliana]
gi|25320334|pir||G84449 probable esterase [imported] -
Arabidopsis thaliana gi|4335745|gb|AAD17422.1| putative
esterase [Arabidopsis thaliana]
Length = 312
Score = 95.9 bits (237), Expect = 4e-19
Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Frame = -1
Query: 613 IEGLVYVHPYFWGGERIGKEGDRPEYVQK-VHDLWRFSYPTTS-GSDDPLLNPAKDPNLG 440
I G++ +HPYFW I + R K V WR + P + G DDP LN G
Sbjct: 182 ISGIILIHPYFWSKTPIDEFEVRDVGKTKGVEGSWRVASPNSKQGVDDPWLNVVGSDPSG 241
Query: 439 KLACGRVLVCVAGNDLLRDRGWYYQDLLEKIGWSGEVEVLEAKDEEHVFHMFKP 278
L CGRVLV VAG+DL +GW Y + L+K GW GEVEV+E K+E HVFH+ P
Sbjct: 242 -LGCGRVLVMVAGDDLFVRQGWCYAEKLKKSGWEGEVEVMETKNEGHVFHLKNP 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,967,242
Number of Sequences: 1393205
Number of extensions: 15094416
Number of successful extensions: 48992
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 45647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48837
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
