Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005298A_C01 KMC005298A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190883.1| glucosyltransferase - like protein; protein id:... 33 2.0
emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus] 32 4.6
gb|AAG51169.1|AC079285_2 hypothetical protein [Arabidopsis thali... 32 4.6
ref|NP_344348.1| Beta-glucuronidase (gusB) [Sulfolobus solfatari... 31 6.0
ref|NP_008845.2| RAR-related orphan receptor B; RAR-related orph... 31 7.8
>ref|NP_190883.1| glucosyltransferase - like protein; protein id: At3g53150.1
[Arabidopsis thaliana] gi|11258164|pir||T46161
glucosyltransferase-like protein - Arabidopsis thaliana
gi|6630735|emb|CAB64218.1| glucosyltransferase-like
protein [Arabidopsis thaliana]
Length = 507
Score = 32.7 bits (73), Expect = 2.0
Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 4/44 (9%)
Frame = +2
Query: 305 FHNYHQCCIS----GNLHLHKLSLSVSSSVFSFGVFGLLHKLRL 424
FH CC S N+HLH LSVSS+V F + G+ H++ +
Sbjct: 150 FHG--MCCFSLLSSHNIHLHSPHLSVSSAVEPFPIPGMPHRIEI 191
>emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus]
Length = 459
Score = 31.6 bits (70), Expect = 4.6
Identities = 20/49 (40%), Positives = 29/49 (58%), Gaps = 4/49 (8%)
Frame = -3
Query: 413 YGEVQKHQRKKQRRRQRGTICANGDSR*YSTGGSCGI----NPSHSTWS 279
Y EVQKHQ++ Q +RQ+ + A +R YS S G+ N + ST+S
Sbjct: 94 YAEVQKHQQRLQEQRQQQSGEAEALARVYSNSISNGLGNLNNETGSTYS 142
>gb|AAG51169.1|AC079285_2 hypothetical protein [Arabidopsis thaliana]
Length = 352
Score = 31.6 bits (70), Expect = 4.6
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Frame = +3
Query: 276 LRPCRVRRVNSTTTTSAVSAGISICTNC-PSLSPPLFFPLVFLDF 407
LR CR RRV+S + + ++ + C NC L P+F L F F
Sbjct: 62 LRTCRKRRVSSPKSVTLPNSNVLECPNCFDPLKKPIFQVLFFFFF 106
>ref|NP_344348.1| Beta-glucuronidase (gusB) [Sulfolobus solfataricus]
gi|25289551|pir||C90485 beta-glucuronidase (gusB)
[imported] - Sulfolobus solfataricus
gi|13816434|gb|AAK43138.1| Beta-glucuronidase (gusB)
[Sulfolobus solfataricus]
Length = 570
Score = 31.2 bits (69), Expect = 6.0
Identities = 19/74 (25%), Positives = 30/74 (39%), Gaps = 19/74 (25%)
Frame = -1
Query: 376 GGDREGQFVQMEIPAD------TALVVVVE-------------LTLLTLHGLNFGFSFKP 254
GG EG F Q + P +VV ++ L N+G +P
Sbjct: 97 GGTHEGSFTQFKFPIKLKVNEFNKIVVKIDNTPSPYNLPPARDLNNAAFDFFNYGGIHRP 156
Query: 253 VYVEYLQRCYVESL 212
VY+E++ C+VE +
Sbjct: 157 VYIEFVDECHVEDI 170
>ref|NP_008845.2| RAR-related orphan receptor B; RAR-related orphan receptor beta;
retinoic acid-binding receptor beta; nuclear receptor
RZR-beta [Homo sapiens]
Length = 459
Score = 30.8 bits (68), Expect = 7.8
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -3
Query: 413 YGEVQKHQRKKQRRRQRGTICANGDSR*YSTGGSCGIN 300
Y EVQKHQ++ Q +RQ+ + A +R YS+ S G++
Sbjct: 94 YAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLS 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,549,593
Number of Sequences: 1393205
Number of extensions: 8829250
Number of successful extensions: 22121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22099
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
