Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005295A_C01 KMC005295A_c01
(694 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564477.1| expressed protein; protein id: At1g36980.1, sup... 124 1e-28
pir||H86488 protein T32E20.29 [imported] - Arabidopsis thaliana ... 69 6e-11
ref|NP_647888.1| CG15012-PB [Drosophila melanogaster] gi|2309299... 40 0.040
ref|NP_490985.1| Putative membrane protein, with at least 3 tran... 37 0.26
gb|EAA31218.1| hypothetical protein [Neurospora crassa] 36 0.58
>ref|NP_564477.1| expressed protein; protein id: At1g36980.1, supported by cDNA:
gi_15292702, supported by cDNA: gi_19310688 [Arabidopsis
thaliana] gi|15292703|gb|AAK92720.1| unknown protein
[Arabidopsis thaliana] gi|19310689|gb|AAL85075.1|
unknown protein [Arabidopsis thaliana]
Length = 135
Score = 124 bits (312), Expect(2) = 1e-28
Identities = 62/80 (77%), Positives = 66/80 (82%), Gaps = 4/80 (5%)
Frame = -1
Query: 694 ALMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVVSFVSLAGSAGLLIPDSLDKSAPSVWT 515
ALMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVV+FVSLA S GLLI DS+ K+ PS WT
Sbjct: 52 ALMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVVAFVSLAASVGLLIQDSVVKTGPSTWT 111
Query: 514 GVAGVLPGVLVLIT----WT 467
GVAGV V VLI+ WT
Sbjct: 112 GVAGVFQCVFVLISGLMYWT 131
Score = 23.9 bits (50), Expect(2) = 1e-28
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 471 GLIYWTSHPE 442
GL+YWTSH E
Sbjct: 126 GLMYWTSHSE 135
>pir||H86488 protein T32E20.29 [imported] - Arabidopsis thaliana
gi|8778790|gb|AAF79798.1|AC020646_21 T32E20.29
[Arabidopsis thaliana]
Length = 150
Score = 68.9 bits (167), Expect = 6e-11
Identities = 31/40 (77%), Positives = 34/40 (84%)
Frame = -1
Query: 694 ALMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVVSFVSLA 575
ALMFNCVRKEDIDYSPYDEGEWRLKLWLF + S ++A
Sbjct: 52 ALMFNCVRKEDIDYSPYDEGEWRLKLWLFHSVCRSIEAVA 91
Score = 38.1 bits (87), Expect = 0.12
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -3
Query: 623 EAVALHCICCILCFFSWISGSTDPRFT**ICPIRVDWSCRCFAGCFSLDHVD*FIGLLIL 444
EAVA H +C +CF S D RF +DW C + C +D V F L L
Sbjct: 88 EAVAFHSVCRSICFLSCFCWLADSRFGCEDWAFNLDWCGWCLSMCICIDKVKLFYALFWL 147
>ref|NP_647888.1| CG15012-PB [Drosophila melanogaster] gi|23092996|gb|AAF47882.2|
CG15012-PB [Drosophila melanogaster]
gi|25009939|gb|AAN71137.1| GH03029p [Drosophila
melanogaster]
Length = 152
Score = 39.7 bits (91), Expect = 0.040
Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Frame = -1
Query: 688 MFNCVRKEDI-DYSPYDEGEWRLKLWLFIAYVVSFVSLAGSAGLLIPDSLDKSAPSVWTG 512
M N V+ E I D + + G K+WL + +++ F S+ + ++I D ++ W G
Sbjct: 65 MVNAVKGEHISDENSSESGARIAKIWLLVGFLMGFASIIAAIWVMIDDFINNEKKDGWFG 124
Query: 511 VAGVLPGVLVL 479
VA ++ V +L
Sbjct: 125 VALLMQNVFIL 135
>ref|NP_490985.1| Putative membrane protein, with at least 3 transmembrane domains,
of bilaterial origin (17.4 kD) [Caenorhabditis elegans]
gi|7332191|gb|AAF60878.1| Hypothetical protein
Y74C10AL.2 [Caenorhabditis elegans]
Length = 157
Score = 37.0 bits (84), Expect = 0.26
Identities = 20/48 (41%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
Frame = -1
Query: 622 KLWLFIAYVVSFVSLAGSAGLLIPD-SLDKSAPSVWTGVAGVLPGVLV 482
+LWL A+VVSF SL + +L D L + + SVW GVA L ++
Sbjct: 93 RLWLMAAFVVSFASLVAATWILFSDYVLIQGSHSVWPGVALFLTNFII 140
>gb|EAA31218.1| hypothetical protein [Neurospora crassa]
Length = 558
Score = 35.8 bits (81), Expect = 0.58
Identities = 20/60 (33%), Positives = 30/60 (49%), Gaps = 11/60 (18%)
Frame = -1
Query: 616 WLFIAYVVSFVSLAGSAGLLIPDSLDKSAPS-----------VWTGVAGVLPGVLVLITW 470
W F ++ ++ + LAG+A L+IPDS+D A S G GV +L+ I W
Sbjct: 236 WAFWSFAIALLCLAGAAQLIIPDSVDAHASSCSFLDKLKQLDAIGGTVGVSALILINIAW 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,425,186
Number of Sequences: 1393205
Number of extensions: 12319709
Number of successful extensions: 26321
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 25410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26304
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
