Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005293A_C01 KMC005293A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97184.1| contains similarity to embryo-specific protein 3... 176 1e-43
ref|NP_201026.1| putative protein; protein id: At5g62200.1 [Arab... 176 1e-43
ref|NP_181678.1| unknown protein; protein id: At2g41470.1 [Arabi... 171 5e-42
dbj|BAB62547.1| OSJNBa0089K24.2 [Oryza sativa (japonica cultivar... 127 8e-29
ref|NP_201027.1| embryo-specific protein - like; protein id: At5... 125 3e-28
>dbj|BAA97184.1| contains similarity to embryo-specific protein 3~gene_id:MMI9.3
[Arabidopsis thaliana]
Length = 231
Score = 176 bits (447), Expect = 1e-43
Identities = 73/111 (65%), Positives = 92/111 (82%)
Frame = -3
Query: 562 CSYTVTIRTSCSSPSYTRDRISLSFGDAYGYQVYVPRLDDPSSRTFERCSTDTFQINGPC 383
C+YTV I TSCSS YTRD+IS++FGD YG Q+Y PRLDDPS++TFE+CS+DTFQINGPC
Sbjct: 48 CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPC 107
Query: 382 TYPICYLYLYRSGYDGWIPESVTVSGYNSQPVTFYYNAFIPAGIWFGFDYC 230
TY ICY+YLYRSG DGWIP +V + + S+ VTF YN ++P +W+GF+YC
Sbjct: 108 TYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYC 158
>ref|NP_201026.1| putative protein; protein id: At5g62200.1 [Arabidopsis thaliana]
Length = 190
Score = 176 bits (447), Expect = 1e-43
Identities = 73/111 (65%), Positives = 92/111 (82%)
Frame = -3
Query: 562 CSYTVTIRTSCSSPSYTRDRISLSFGDAYGYQVYVPRLDDPSSRTFERCSTDTFQINGPC 383
C+YTV I TSCSS YTRD+IS++FGD YG Q+Y PRLDDPS++TFE+CS+DTFQINGPC
Sbjct: 48 CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSDTFQINGPC 107
Query: 382 TYPICYLYLYRSGYDGWIPESVTVSGYNSQPVTFYYNAFIPAGIWFGFDYC 230
TY ICY+YLYRSG DGWIP +V + + S+ VTF YN ++P +W+GF+YC
Sbjct: 108 TYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYC 158
>ref|NP_181678.1| unknown protein; protein id: At2g41470.1 [Arabidopsis thaliana]
gi|7487450|pir||T02442 hypothetical protein At2g41470
[imported] - Arabidopsis thaliana
gi|3241945|gb|AAC23732.1| unknown protein [Arabidopsis
thaliana]
Length = 365
Score = 171 bits (434), Expect = 5e-42
Identities = 74/115 (64%), Positives = 92/115 (79%)
Frame = -3
Query: 568 AGCSYTVTIRTSCSSPSYTRDRISLSFGDAYGYQVYVPRLDDPSSRTFERCSTDTFQING 389
A CSYTV I+TSCSS SYTRD+IS+SFGD YG +VYV RLDDPSSRTFE+CS+DT++I+G
Sbjct: 46 AACSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTYKISG 105
Query: 388 PCTYPICYLYLYRSGYDGWIPESVTVSGYNSQPVTFYYNAFIPAGIWFGFDYCRG 224
PC +CYLYL R G DGW PE+V + G + + VTFYYN F+P +W+GF+ C G
Sbjct: 106 PCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNG 160
>dbj|BAB62547.1| OSJNBa0089K24.2 [Oryza sativa (japonica cultivar-group)]
Length = 191
Score = 127 bits (320), Expect = 8e-29
Identities = 65/128 (50%), Positives = 79/128 (60%), Gaps = 8/128 (6%)
Frame = -3
Query: 562 CSYTVTIRTSCSSPSYTRDRISLSFGDAYGYQVYVPRL-------DDPSSRTFERCSTDT 404
C YTV I+TSC+SP T D +SL+FGDAY +VY RL SS FERC+TDT
Sbjct: 63 CWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGSSSSPQPSSSAAFERCATDT 122
Query: 403 FQINGPCTYPICYLYLYRSGYDGWIPESVTVSGYNSQ-PVTFYYNAFIPAGIWFGFDYCR 227
F++ GPC Y +CYLYL RSG DGW P+ V V S P TFYY +P +W+GF+ C
Sbjct: 123 FRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNRCP 182
Query: 226 GYLPSPAA 203
S AA
Sbjct: 183 RLAASAAA 190
>ref|NP_201027.1| embryo-specific protein - like; protein id: At5g62210.1, supported
by cDNA: 28168. [Arabidopsis thaliana]
gi|8809634|dbj|BAA97185.1| contains similarity to
embryo-specific protein 3~gene_id:MMI9.4 [Arabidopsis
thaliana] gi|21555501|gb|AAM63873.1| embryo-specific
protein-like [Arabidopsis thaliana]
Length = 223
Score = 125 bits (315), Expect = 3e-28
Identities = 59/126 (46%), Positives = 81/126 (63%), Gaps = 3/126 (2%)
Frame = -3
Query: 574 QNAGCSYTVTIRTSCSSPSYTRDRISLSFGDAYGYQVYVPRLDDPSSRT--FERCSTDTF 401
+ C YTV + TSC SP ++RD+++++ GDA QV PRLD P S FE+CS+DTF
Sbjct: 36 EEESCPYTVIVTTSCFSPDWSRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTF 95
Query: 400 QINGPCTYPICYLYLYRSGYDGWIPESVTVSGYNSQPVTFYYNAFIPAGIWFGFDYCRGY 221
Q+ G C IC +Y+YRSG DGWIPE+V + S+ V F +N +P IW+G +YC
Sbjct: 96 QVKGKCLNTICSVYIYRSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYCNNT 155
Query: 220 -LPSPA 206
LP P+
Sbjct: 156 DLPPPS 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,075,929
Number of Sequences: 1393205
Number of extensions: 12849785
Number of successful extensions: 32405
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 31293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32370
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
