Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005290A_C01 KMC005290A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192040.1| putative L5 ribosomal protein; protein id: At4g... 168 3e-41
gb|AAF64313.1|AF250923_1 plastid ribosomal protein PRPL5 [Spinac... 152 2e-36
gb|AAC64970.1| 50S ribosomal protein L5 [Oryza sativa] 139 2e-32
ref|NP_038365.1| ribosomal protein L5 [Mesostigma viride] gi|145... 110 1e-23
ref|NP_294046.1| ribosomal protein L5 [Deinococcus radiodurans] ... 107 1e-22
>ref|NP_192040.1| putative L5 ribosomal protein; protein id: At4g01310.1, supported
by cDNA: 22919., supported by cDNA: gi_15810310,
supported by cDNA: gi_21281100 [Arabidopsis thaliana]
gi|7440681|pir||T01713 ribosomal protein L5, organellar
- Arabidopsis thaliana gi|2191128|gb|AAB61015.1| belongs
to the L5P family of ribosomal proteins [Arabidopsis
thaliana] gi|7267628|emb|CAB80940.1| putative L5
ribosomal protein [Arabidopsis thaliana]
gi|15810311|gb|AAL07043.1| putative L5 ribosomal protein
[Arabidopsis thaliana] gi|21281101|gb|AAM45056.1|
putative L5 ribosomal protein [Arabidopsis thaliana]
gi|21592367|gb|AAM64318.1| putative L5 ribosomal protein
[Arabidopsis thaliana]
Length = 262
Score = 168 bits (426), Expect = 3e-41
Identities = 80/106 (75%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
Frame = -2
Query: 545 DRLVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGVFPEIRFDVVGKPRGMDVCIETTA 366
DRL+NL PRTRDFQGV+ SSFDG+GN++IG+KDQGVFPEIRFD VGK RGMDVCI TTA
Sbjct: 156 DRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTA 215
Query: 365 ETDKEAQRLLALLGMPFREGGGSSATAL-PKKKLKSHHFDPKAKGK 231
++D+E Q+LLAL+GMPFREGGG S A+ KKKLKSHHFD K KGK
Sbjct: 216 KSDQEGQKLLALMGMPFREGGGGSTGAIVRKKKLKSHHFDAKGKGK 261
>gb|AAF64313.1|AF250923_1 plastid ribosomal protein PRPL5 [Spinacia oleracea]
Length = 207
Score = 152 bits (385), Expect = 2e-36
Identities = 73/105 (69%), Positives = 89/105 (84%)
Frame = -2
Query: 545 DRLVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGVFPEIRFDVVGKPRGMDVCIETTA 366
DRL+NL PRTRDFQGVN +SFDGHGN+++G ++Q VFPEI+ ++VGK RGMDVCI TTA
Sbjct: 103 DRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTA 162
Query: 365 ETDKEAQRLLALLGMPFREGGGSSATALPKKKLKSHHFDPKAKGK 231
+TDKEA +LL+L+GMPFREG G S T + KKKLKSHHFD K KG+
Sbjct: 163 KTDKEAYKLLSLMGMPFREGSGPS-TLVRKKKLKSHHFDAK-KGR 205
>gb|AAC64970.1| 50S ribosomal protein L5 [Oryza sativa]
Length = 280
Score = 139 bits (350), Expect = 2e-32
Identities = 69/105 (65%), Positives = 80/105 (75%)
Frame = -2
Query: 545 DRLVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGVFPEIRFDVVGKPRGMDVCIETTA 366
DRL+NLG PRT DF GVN +SFDGHGNF IG++DQGVFPEI ++V GK GMDVCI TTA
Sbjct: 176 DRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGKKNGMDVCIVTTA 235
Query: 365 ETDKEAQRLLALLGMPFREGGGSSATALPKKKLKSHHFDPKAKGK 231
+TD EA RLL LLGMPF E SS + KK+LK HHF K +G+
Sbjct: 236 KTDNEALRLLTLLGMPFAEHIKSS-VVIRKKRLKRHHFMSKGRGR 279
>ref|NP_038365.1| ribosomal protein L5 [Mesostigma viride]
gi|14548222|sp|Q9MUU5|RK5_MESVI Chloroplast 50S
ribosomal protein L5
gi|7259505|gb|AAF43806.1|AF166114_18 ribosomal protein
L5 [Mesostigma viride]
Length = 184
Score = 110 bits (274), Expect = 1e-23
Identities = 49/79 (62%), Positives = 63/79 (79%)
Frame = -2
Query: 545 DRLVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGVFPEIRFDVVGKPRGMDVCIETTA 366
DRL+NL PR RDFQGV++ SFDGHGN+N+G+K+Q +FPEI +D + K RGMD+CI T A
Sbjct: 102 DRLINLALPRIRDFQGVSSKSFDGHGNYNLGLKEQLMFPEIDYDQIDKIRGMDICIVTNA 161
Query: 365 ETDKEAQRLLALLGMPFRE 309
+TD E LL +LGMPF+E
Sbjct: 162 KTDSEGFYLLEVLGMPFKE 180
>ref|NP_294046.1| ribosomal protein L5 [Deinococcus radiodurans]
gi|7473831|pir||C75535 ribosomal protein L5 -
Deinococcus radiodurans (strain R1)
gi|28948923|pdb|1NKW|D Chain D, Crystal Structure Of The
Large Ribosomal Subunit From Deinococcus Radiodurans
gi|6457997|gb|AAF09904.1|AE001892_15 ribosomal protein
L5 [Deinococcus radiodurans]
Length = 180
Score = 107 bits (266), Expect = 1e-22
Identities = 45/79 (56%), Positives = 66/79 (82%)
Frame = -2
Query: 545 DRLVNLGFPRTRDFQGVNTSSFDGHGNFNIGIKDQGVFPEIRFDVVGKPRGMDVCIETTA 366
++L+N+G PR RDF+G+N ++FDG GN+N+GIK+Q +FPEI +D+V K RGMD+ I TTA
Sbjct: 101 EKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTA 160
Query: 365 ETDKEAQRLLALLGMPFRE 309
+TD+EA+ LL +G+PFR+
Sbjct: 161 KTDEEARALLQSMGLPFRK 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,286,023
Number of Sequences: 1393205
Number of extensions: 11104475
Number of successful extensions: 32676
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 31528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32659
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
