Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005280A_C01 KMC005280A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG32325.1|AF298118_1 putative transcription factor Golden2 [... 51 9e-06
gb|AAK50394.1|AF318582_1 putative transcription factor OsGLK2 [O... 50 2e-05
dbj|BAB17208.1| OSJNBa0086P08.18 [Oryza sativa (japonica cultiva... 50 2e-05
ref|NP_199232.1| putative protein; protein id: At5g44190.1, supp... 49 4e-05
gb|AAK50393.1|AF318581_1 putative transcription factor OsGLK1 [O... 49 6e-05
>gb|AAG32325.1|AF298118_1 putative transcription factor Golden2 [Zea mays]
gi|13940494|gb|AAK50391.1|AF318579_1 putative
transcription factor GOLDEN 2 [Zea mays]
Length = 461
Score = 51.2 bits (121), Expect = 9e-06
Identities = 22/34 (64%), Positives = 28/34 (81%)
Frame = -1
Query: 573 WLPLPLGLKPPSMDTVLSELSSQGISGIIPFSST 472
WLPLPLGLKPPS+D+V+SEL QG+ I P ++T
Sbjct: 422 WLPLPLGLKPPSLDSVMSELHKQGVPKIPPAAAT 455
>gb|AAK50394.1|AF318582_1 putative transcription factor OsGLK2 [Oryza sativa]
Length = 430
Score = 50.4 bits (119), Expect = 2e-05
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = -1
Query: 573 WLPLPLGLKPPSMDTVLSELSSQGISGIIPFSS 475
WLPLPLGLKPPS+D+V+SEL QGI + P +S
Sbjct: 394 WLPLPLGLKPPSLDSVMSELHKQGIPKVPPAAS 426
>dbj|BAB17208.1| OSJNBa0086P08.18 [Oryza sativa (japonica cultivar-group)]
Length = 513
Score = 50.4 bits (119), Expect = 2e-05
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = -1
Query: 573 WLPLPLGLKPPSMDTVLSELSSQGISGIIPFSS 475
WLPLPLGLKPPS+D+V+SEL QGI + P +S
Sbjct: 477 WLPLPLGLKPPSLDSVMSELHKQGIPKVPPAAS 509
>ref|NP_199232.1| putative protein; protein id: At5g44190.1, supported by cDNA:
gi_13311004, supported by cDNA: gi_15215714, supported
by cDNA: gi_17221600 [Arabidopsis thaliana]
gi|9759520|dbj|BAB10986.1| contains similarity to
unknown protein~gb|AAD21709.1~gene_id:MLN1.11
[Arabidopsis thaliana] gi|13311005|gb|AAK16744.1|
golden2-like transcription factor [Arabidopsis thaliana]
gi|13432090|gb|AAK20121.1| golden2-like protein 2
[Arabidopsis thaliana] gi|17221601|dbj|BAB78467.1| GPRI2
[Arabidopsis thaliana]
Length = 386
Score = 48.9 bits (115), Expect = 4e-05
Identities = 20/30 (66%), Positives = 25/30 (82%)
Frame = -1
Query: 573 WLPLPLGLKPPSMDTVLSELSSQGISGIIP 484
WLPLPLGLKPPS+D V++EL QG+S + P
Sbjct: 355 WLPLPLGLKPPSVDGVMTELQRQGVSNVPP 384
>gb|AAK50393.1|AF318581_1 putative transcription factor OsGLK1 [Oryza sativa]
Length = 455
Score = 48.5 bits (114), Expect = 6e-05
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -1
Query: 573 WLPLPLGLKPPSMDTVLSELSSQGISGIIP 484
WLPLPLGLKPPS+D+V+ EL QG++ + P
Sbjct: 423 WLPLPLGLKPPSVDSVMGELQRQGVANVPP 452
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,523,212
Number of Sequences: 1393205
Number of extensions: 9911218
Number of successful extensions: 22714
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22708
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
