Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005278A_C01 KMC005278A_c01
(678 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P24613|RK21_SPIOL 50S RIBOSOMAL PROTEIN L21, CHLOROPLAST PREC... 138 2e-32
ref|NP_174808.1| 50S ribosomal protein L21 chloroplast precursor... 131 7e-30
ref|NP_567861.1| WRKY family transcription factor; protein id: A... 93 3e-18
pir||B85362 hypothetical protein AT4g30930 [imported] - Arabidop... 93 3e-18
ref|NP_347888.1| Ribosomal protein L21 [Clostridium acetobutylic... 85 8e-16
>sp|P24613|RK21_SPIOL 50S RIBOSOMAL PROTEIN L21, CHLOROPLAST PRECURSOR (CL21) (CS-L7)
gi|477106|pir||A48103 ribosomal protein L21 precursor,
chloroplast - spinach gi|21315|emb|CAA40019.1| L21
r-protein [Spinacia oleracea] gi|170135|gb|AAA34041.1|
ribosomal protein L21 gi|310590|gb|AAA74715.1| ribosomal
protein L21
Length = 256
Score = 138 bits (348), Expect(2) = 2e-32
Identities = 69/102 (67%), Positives = 77/102 (74%)
Frame = -3
Query: 643 PPSWEPGLFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKP 464
PP +FAVV++G RQYIV PGRWI QRLKGA NDKI L KVLLVGT S YIG P
Sbjct: 116 PPPPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTP 175
Query: 463 IVSNAVVYATVEEQGFDPKVIVFKYKRKKHYRRTYGHKQPHT 338
IV+NA V+A VEEQ D KVIVFKYK+KK+YRR GH+QP T
Sbjct: 176 IVTNAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPIT 217
Score = 22.7 bits (47), Expect(2) = 2e-32
Identities = 9/22 (40%), Positives = 17/22 (76%), Gaps = 1/22 (4%)
Frame = -2
Query: 323 TALLGYENYPKVTMD-DVKSEE 261
T + GYE+YP T++ +V+++E
Sbjct: 222 TGITGYEDYPASTLEAEVEAKE 243
>ref|NP_174808.1| 50S ribosomal protein L21 chloroplast precursor (CL21); protein id:
At1g35680.1, supported by cDNA: gi_16226898, supported
by cDNA: gi_16648684 [Arabidopsis thaliana]
gi|1710424|sp|P51412|RK21_ARATH 50S ribosomal protein
L21, chloroplast precursor (CL21) gi|2129718|pir||S71282
ribosomal protein L21 precursor, chloroplast -
Arabidopsis thaliana gi|1149573|emb|CAA89887.1|
chloroplast ribosomal large subunit protein L21
[Arabidopsis thaliana]
gi|8778379|gb|AAF79387.1|AC007887_46 F15O4.7
[Arabidopsis thaliana] gi|14456036|emb|CAB59360.2|
chloroplast ribosomal protein L21 [Arabidopsis thaliana]
gi|16226899|gb|AAL16293.1|AF428363_1 At1g35680/F15O4_7
[Arabidopsis thaliana] gi|16648685|gb|AAL25535.1|
At1g35680/F15O4_7 [Arabidopsis thaliana]
gi|21436001|gb|AAM51578.1| At1g35680/F15O4_7
[Arabidopsis thaliana]
Length = 220
Score = 131 bits (330), Expect = 7e-30
Identities = 62/95 (65%), Positives = 75/95 (78%)
Frame = -3
Query: 622 LFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNAVV 443
+FAV+MVGGRQYIV PGR++ QRLK A +D+I L KVLLVGT T YIGKP+V+NA V
Sbjct: 100 IFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATV 159
Query: 442 YATVEEQGFDPKVIVFKYKRKKHYRRTYGHKQPHT 338
+A VE QG + KV+VFKYK KK YRR GH+QP+T
Sbjct: 160 HAVVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNT 194
>ref|NP_567861.1| WRKY family transcription factor; protein id: At4g30930.1,
supported by cDNA: 7876. [Arabidopsis thaliana]
gi|12641613|emb|CAC27453.1| putative ribosomal protein
L21 [Arabidopsis thaliana] gi|21595368|gb|AAM66095.1|
unknown [Arabidopsis thaliana]
gi|29028852|gb|AAO64805.1| At4g30930 [Arabidopsis
thaliana]
Length = 270
Score = 93.2 bits (230), Expect = 3e-18
Identities = 47/99 (47%), Positives = 67/99 (67%)
Frame = -3
Query: 634 WEPGLFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVS 455
+EP +FA+V +G Q+ V G I ++LK NDK+ L KVLL+G+ + IG+PI+
Sbjct: 137 YEP-VFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILP 195
Query: 454 NAVVYATVEEQGFDPKVIVFKYKRKKHYRRTYGHKQPHT 338
+A V+A VEE D KV++FK KR+K+YRRT GH+Q T
Sbjct: 196 DATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELT 234
>pir||B85362 hypothetical protein AT4g30930 [imported] - Arabidopsis thaliana
gi|2980773|emb|CAA18200.1| putative protein [Arabidopsis
thaliana] gi|7269995|emb|CAB79811.1| putative protein
[Arabidopsis thaliana]
Length = 782
Score = 93.2 bits (230), Expect = 3e-18
Identities = 47/99 (47%), Positives = 67/99 (67%)
Frame = -3
Query: 634 WEPGLFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVS 455
+EP +FA+V +G Q+ V G I ++LK NDK+ L KVLL+G+ + IG+PI+
Sbjct: 649 YEP-VFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILP 707
Query: 454 NAVVYATVEEQGFDPKVIVFKYKRKKHYRRTYGHKQPHT 338
+A V+A VEE D KV++FK KR+K+YRRT GH+Q T
Sbjct: 708 DATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELT 746
>ref|NP_347888.1| Ribosomal protein L21 [Clostridium acetobutylicum]
gi|25295377|pir||A97055 ribosomal protein L21 [imported]
- Clostridium acetobutylicum
gi|15024184|gb|AAK79228.1|AE007639_1 Ribosomal protein
L21 [Clostridium acetobutylicum]
Length = 103
Score = 85.1 bits (209), Expect = 8e-16
Identities = 44/95 (46%), Positives = 60/95 (62%)
Frame = -3
Query: 622 LFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNAVV 443
++AV+ GG+QY V G I V+++ A+ + I L +VL V + +GKP+V A V
Sbjct: 1 MYAVIATGGKQYKVQEGDAIYVEKI-AAEVDSTIELNEVLAVSKEDGLVLGKPVVEGAKV 59
Query: 442 YATVEEQGFDPKVIVFKYKRKKHYRRTYGHKQPHT 338
A VE QG K+IVFKYKRKK YRR GH+Q +T
Sbjct: 60 VAKVEAQGKSKKIIVFKYKRKKDYRRKRGHRQAYT 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,356,857
Number of Sequences: 1393205
Number of extensions: 12397957
Number of successful extensions: 33912
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 32391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33815
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
