Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005274A_C01 KMC005274A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC95009.1| endo-1,4-beta-glucanase precursor [Fragaria x ana... 179 3e-44
gb|AAC78293.1| cellulase [Fragaria x ananassa] 179 3e-44
emb|CAB43937.1| endo-beta-1,4-glucanase [Fragaria x ananassa] gi... 179 3e-44
gb|AAD12577.1| putative cellulase [Fragaria x ananassa] 178 4e-44
ref|NP_177228.1| glycosyl hydrolase family 9 (endo-1,4-beta-gluc... 175 4e-43
>gb|AAC95009.1| endo-1,4-beta-glucanase precursor [Fragaria x ananassa]
Length = 496
Score = 179 bits (453), Expect = 3e-44
Identities = 83/100 (83%), Positives = 91/100 (91%)
Frame = -1
Query: 607 NPLGMSYMVGYGARYPQRIHHRGSSLPSVATHPAHIGCKAGSQYFFSPNPNPNVLVGAVV 428
NPL MSYMVGYG RYPQRIHHRGSSLPSV HPA IGCKAGS+YF SPNPNPN LVGAVV
Sbjct: 397 NPLRMSYMVGYGPRYPQRIHHRGSSLPSVQAHPARIGCKAGSRYFMSPNPNPNKLVGAVV 456
Query: 427 GGPTNNTDSFPDSRPFFQESEPTTYINAPLLGLLAFFTAH 308
GGP N++D+FPDSRP+FQESEPTTYINAPL+GLL++F AH
Sbjct: 457 GGP-NSSDAFPDSRPYFQESEPTTYINAPLVGLLSYFAAH 495
>gb|AAC78293.1| cellulase [Fragaria x ananassa]
Length = 496
Score = 179 bits (453), Expect = 3e-44
Identities = 83/100 (83%), Positives = 91/100 (91%)
Frame = -1
Query: 607 NPLGMSYMVGYGARYPQRIHHRGSSLPSVATHPAHIGCKAGSQYFFSPNPNPNVLVGAVV 428
NPL MSYMVGYG RYPQRIHHRGSSLPSV HPA IGCKAGS+YF SPNPNPN LVGAVV
Sbjct: 397 NPLRMSYMVGYGPRYPQRIHHRGSSLPSVQAHPARIGCKAGSRYFLSPNPNPNKLVGAVV 456
Query: 427 GGPTNNTDSFPDSRPFFQESEPTTYINAPLLGLLAFFTAH 308
GGP N++D+FPDSRP+FQESEPTTYINAPL+GLL++F AH
Sbjct: 457 GGP-NSSDAFPDSRPYFQESEPTTYINAPLVGLLSYFAAH 495
>emb|CAB43937.1| endo-beta-1,4-glucanase [Fragaria x ananassa]
gi|22208355|emb|CAC94007.1| endo-beta-1,4-glucanase
[Fragaria x ananassa]
Length = 496
Score = 179 bits (453), Expect = 3e-44
Identities = 83/100 (83%), Positives = 91/100 (91%)
Frame = -1
Query: 607 NPLGMSYMVGYGARYPQRIHHRGSSLPSVATHPAHIGCKAGSQYFFSPNPNPNVLVGAVV 428
NPL MSYMVGYG RYPQRIHHRGSSLPSV HPA IGCKAGS+YF SPNPNPN LVGAVV
Sbjct: 397 NPLRMSYMVGYGPRYPQRIHHRGSSLPSVQAHPARIGCKAGSRYFLSPNPNPNKLVGAVV 456
Query: 427 GGPTNNTDSFPDSRPFFQESEPTTYINAPLLGLLAFFTAH 308
GGP N++D+FPDSRP+FQESEPTTYINAPL+GLL++F AH
Sbjct: 457 GGP-NSSDAFPDSRPYFQESEPTTYINAPLVGLLSYFAAH 495
>gb|AAD12577.1| putative cellulase [Fragaria x ananassa]
Length = 496
Score = 178 bits (452), Expect = 4e-44
Identities = 83/100 (83%), Positives = 90/100 (90%)
Frame = -1
Query: 607 NPLGMSYMVGYGARYPQRIHHRGSSLPSVATHPAHIGCKAGSQYFFSPNPNPNVLVGAVV 428
NPL MSYMVGYG RYPQRIHHRGSSLPSV HPA IGCKAGS YF SPNPNPN LVGAVV
Sbjct: 397 NPLRMSYMVGYGPRYPQRIHHRGSSLPSVQAHPARIGCKAGSHYFLSPNPNPNKLVGAVV 456
Query: 427 GGPTNNTDSFPDSRPFFQESEPTTYINAPLLGLLAFFTAH 308
GGP N++D+FPDSRP+FQESEPTTYINAPL+GLL++F AH
Sbjct: 457 GGP-NSSDAFPDSRPYFQESEPTTYINAPLVGLLSYFAAH 495
>ref|NP_177228.1| glycosyl hydrolase family 9 (endo-1,4-beta-glucanase); protein id:
At1g70710.1, supported by cDNA: gi_15081780, supported
by cDNA: gi_18377810 [Arabidopsis thaliana]
gi|25350165|pir||E96731 endo-1,4-beta-glucanase,
41628-45234 [imported] - Arabidopsis thaliana
gi|12324747|gb|AAG52329.1|AC011663_8
endo-1,4-beta-glucanase; 41628-45234 [Arabidopsis
thaliana] gi|15081781|gb|AAK82545.1| At1g70710/F5A18_11
[Arabidopsis thaliana] gi|18377811|gb|AAL67092.1|
At1g70710/F5A18_11 [Arabidopsis thaliana]
Length = 492
Score = 175 bits (444), Expect = 4e-43
Identities = 77/100 (77%), Positives = 93/100 (93%)
Frame = -1
Query: 607 NPLGMSYMVGYGARYPQRIHHRGSSLPSVATHPAHIGCKAGSQYFFSPNPNPNVLVGAVV 428
NP+G+SYMVGYG ++P+RIHHRGSS+PSV+ HP+HIGCK GS+YF SPNPNPN+LVGAVV
Sbjct: 390 NPMGLSYMVGYGQKFPRRIHHRGSSVPSVSAHPSHIGCKEGSRYFLSPNPNPNLLVGAVV 449
Query: 427 GGPTNNTDSFPDSRPFFQESEPTTYINAPLLGLLAFFTAH 308
GGP N TD+FPDSRP+FQ+SEPTTYINAPL+GLL +F+AH
Sbjct: 450 GGP-NVTDAFPDSRPYFQQSEPTTYINAPLVGLLGYFSAH 488
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,259,698
Number of Sequences: 1393205
Number of extensions: 13775953
Number of successful extensions: 42591
Number of sequences better than 10.0: 186
Number of HSP's better than 10.0 without gapping: 38374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41811
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
