Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005270A_C01 KMC005270A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica] 183 2e-45
gb|AAF80591.1|AF223420_1 xyloglucan endotransglycosylase XET2 [A... 172 4e-42
dbj|BAB86890.1| syringolide-induced protein 19-1-5 [Glycine max] 169 2e-41
emb|CAA10231.1| xyloglucan endotransglycosylase 1 [Fagus sylvatica] 169 3e-41
ref|NP_200564.1| xyloglucan endotransglycosylase (TCH4); protein... 157 1e-37
>gb|AAN07898.1| xyloglucan endotransglycosylase [Malus x domestica]
Length = 282
Score = 183 bits (464), Expect = 2e-45
Identities = 84/116 (72%), Positives = 95/116 (81%), Gaps = 3/116 (2%)
Frame = -3
Query: 571 LESKGVAFP*KPALRIFSSPWNADDWAPRGGLVKTDWSQAPFPASYKSFNAQACVWTSSG 392
LESKGV+FP + I+SS WNADDWA RGGLVKTDWS+APF ASY++FNAQAC W+S
Sbjct: 167 LESKGVSFPKDQGMWIYSSLWNADDWATRGGLVKTDWSKAPFTASYRNFNAQACTWSSGT 226
Query: 391 SSC---SSNQDSWMKESLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGFPPECSIA 233
S C S N+ SW+ +SLDSTGQ RI+WVQKNYMIYNYC DTKRFPQGFPPECS A
Sbjct: 227 SRCPSKSPNESSWLTQSLDSTGQERIKWVQKNYMIYNYCRDTKRFPQGFPPECSAA 282
>gb|AAF80591.1|AF223420_1 xyloglucan endotransglycosylase XET2 [Asparagus officinalis]
Length = 284
Score = 172 bits (435), Expect = 4e-42
Identities = 75/120 (62%), Positives = 95/120 (78%), Gaps = 7/120 (5%)
Frame = -3
Query: 571 LESKGVAFP*KPALRIFSSPWNADDWAPRGGLVKTDWSQAPFPASYKSFNAQACVWTSSG 392
+ES+GVAFP ++I+SS WNADDWA RGGL+KTDW++APF ASY++FNA ACVW++
Sbjct: 165 MESRGVAFPKSQPMKIYSSLWNADDWATRGGLIKTDWTKAPFTASYRNFNANACVWSAGT 224
Query: 391 SSCSSNQ-------DSWMKESLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGFPPECSIA 233
S+CSS + ++W+ E LDST Q R++WVQKNYMIYNYC D KRFPQG PPECS+A
Sbjct: 225 STCSSKKSPSASPSNAWLNEELDSTRQERMRWVQKNYMIYNYCADLKRFPQGLPPECSVA 284
>dbj|BAB86890.1| syringolide-induced protein 19-1-5 [Glycine max]
Length = 285
Score = 169 bits (429), Expect = 2e-41
Identities = 78/119 (65%), Positives = 92/119 (76%), Gaps = 6/119 (5%)
Frame = -3
Query: 571 LESKGVAFP*KPALRIFSSPWNADDWAPRGGLVKTDWSQAPFPASYKSFNAQACVWTSSG 392
+ESKGV FP A+RI+SS WNADDWA RGGLVKTDW+QAPF ASY++FNA AC +S
Sbjct: 167 MESKGVPFPKNQAMRIYSSLWNADDWATRGGLVKTDWTQAPFTASYRNFNANACTMSSGT 226
Query: 391 SSC------SSNQDSWMKESLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGFPPECSIA 233
SSC SSN + W+ E LDST Q R++WVQKNYMIYNYC+DT+RFPQG P EC+ A
Sbjct: 227 SSCGSNNPSSSNNNVWLSEELDSTDQERLKWVQKNYMIYNYCSDTQRFPQGLPSECNTA 285
>emb|CAA10231.1| xyloglucan endotransglycosylase 1 [Fagus sylvatica]
Length = 292
Score = 169 bits (427), Expect = 3e-41
Identities = 74/117 (63%), Positives = 93/117 (79%), Gaps = 7/117 (5%)
Frame = -3
Query: 568 ESKGVAFP*KPALRIFSSPWNADDWAPRGGLVKTDWSQAPFPASYKSFNAQACVWTSSGS 389
ES GV P K +R++SS WNADDWA RGGL+KTDW++ PF ASY++FNA+AC+W+S S
Sbjct: 172 ESIGVPIPKKQPMRLYSSLWNADDWATRGGLLKTDWARTPFTASYRNFNARACLWSSGES 231
Query: 388 SC-------SSNQDSWMKESLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGFPPECS 239
+C +SN ++W+KE LD T Q R++WVQKNYMIYNYCTDTKRFPQGFPPEC+
Sbjct: 232 TCTANSQSSTSNNNAWLKEDLDFTRQERLKWVQKNYMIYNYCTDTKRFPQGFPPECA 288
>ref|NP_200564.1| xyloglucan endotransglycosylase (TCH4); protein id: At5g57560.1,
supported by cDNA: gi_14194112, supported by cDNA:
gi_15450688, supported by cDNA: gi_15777882, supported
by cDNA: gi_17386135, supported by cDNA: gi_2952472
[Arabidopsis thaliana] gi|25313554|pir||T52097
xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-)
[imported] - Arabidopsis thaliana
gi|886116|gb|AAA92363.1| TCH4 protein
gi|2952473|gb|AAC05572.1| xyloglucan
endotransglycosylase related protein [Arabidopsis
thaliana] gi|9758317|dbj|BAB08791.1| TCH4 protein
[Arabidopsis thaliana]
gi|14194113|gb|AAK56251.1|AF367262_1 AT5g57560/MUA2_13
[Arabidopsis thaliana] gi|15450689|gb|AAK96616.1|
AT5g57560/MUA2_13 [Arabidopsis thaliana]
gi|15777883|gb|AAL05902.1| AT5g57560/MUA2_13
[Arabidopsis thaliana]
gi|17386136|gb|AAL38614.1|AF446881_1 AT5g57560/MUA2_13
[Arabidopsis thaliana]
Length = 284
Score = 157 bits (396), Expect = 1e-37
Identities = 70/119 (58%), Positives = 85/119 (70%), Gaps = 6/119 (5%)
Frame = -3
Query: 571 LESKGVAFP*KPALRIFSSPWNADDWAPRGGLVKTDWSQAPFPASYKSFNAQACVWTSSG 392
+ES G FP +R++SS WNADDWA RGGLVKTDWS+APF ASY+ F +ACVW++
Sbjct: 166 MESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGK 225
Query: 391 SSC------SSNQDSWMKESLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGFPPECSIA 233
SSC + SW+ + LDST Q R++WVQ+NYMIYNYCTD KRFPQG P EC A
Sbjct: 226 SSCPNASKQGTTTGSWLSQELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKECLAA 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,201,092
Number of Sequences: 1393205
Number of extensions: 11026556
Number of successful extensions: 23683
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 23081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23577
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
