Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005257A_C01 KMC005257A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF67342.1| beta galactosidase [Vigna radiata] 118 4e-26
emb|CAA10128.1| beta-galactosidase [Cicer arietinum] 116 2e-25
gb|AAG12249.1|AF184080_1 beta-galactosidase [Prunus armeniaca] 107 9e-23
gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersic... 101 5e-21
pir||B85429 beta-galactosidase like protein [imported] - Arabido... 99 3e-20
>gb|AAF67342.1| beta galactosidase [Vigna radiata]
Length = 739
Score = 118 bits (296), Expect = 4e-26
Identities = 52/67 (77%), Positives = 59/67 (87%)
Frame = -3
Query: 540 GTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRMVHTARVH 361
GT+RP KCQLGCGQPTQ+WYHVPRSWLKPT NLIV+ EELGGNPWKISL KR++HT
Sbjct: 674 GTYRPAKCQLGCGQPTQQWYHVPRSWLKPTNNLIVLLEELGGNPWKISLQKRIIHTP-AS 732
Query: 360 SEPDSEN 340
SEP+S+N
Sbjct: 733 SEPNSKN 739
>emb|CAA10128.1| beta-galactosidase [Cicer arietinum]
Length = 745
Score = 116 bits (291), Expect = 2e-25
Identities = 52/64 (81%), Positives = 56/64 (87%)
Frame = -3
Query: 540 GTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRMVHTARVH 361
GT+R KCQLGCGQPTQRWYHVPRSWLKPT NL+VVFEELGGNPWKISLVKR +HT
Sbjct: 675 GTYRQAKCQLGCGQPTQRWYHVPRSWLKPTNNLMVVFEELGGNPWKISLVKRTIHTP-AS 733
Query: 360 SEPD 349
SEP+
Sbjct: 734 SEPN 737
>gb|AAG12249.1|AF184080_1 beta-galactosidase [Prunus armeniaca]
Length = 376
Score = 107 bits (267), Expect = 9e-23
Identities = 47/54 (87%), Positives = 51/54 (94%)
Frame = -3
Query: 540 GTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRMV 379
GTFRP KCQLGCGQPTQRWYHVPRSWLKPTKNL+V+FEELGG+P KI+LVKR V
Sbjct: 198 GTFRPTKCQLGCGQPTQRWYHVPRSWLKPTKNLMVMFEELGGDPSKITLVKRSV 251
>gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersicon esculentum]
Length = 845
Score = 101 bits (252), Expect = 5e-21
Identities = 43/54 (79%), Positives = 50/54 (91%)
Frame = -3
Query: 540 GTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRMV 379
G FRP KCQLGCG+PTQ+WYHVPRSWLKPT+NL+V+FEELGG+P +ISLVKR V
Sbjct: 675 GVFRPPKCQLGCGEPTQKWYHVPRSWLKPTQNLLVLFEELGGDPTRISLVKRSV 728
>pir||B85429 beta-galactosidase like protein [imported] - Arabidopsis thaliana
gi|4006924|emb|CAB16852.1| beta-galactosidase like
protein [Arabidopsis thaliana]
gi|7270584|emb|CAB80302.1| beta-galactosidase like
protein [Arabidopsis thaliana]
Length = 853
Score = 99.4 bits (246), Expect = 3e-20
Identities = 41/54 (75%), Positives = 49/54 (89%)
Frame = -3
Query: 540 GTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLVKRMV 379
GT++P KCQ GCGQPTQRWYHVPR+WLKP++NL+V+FEELGGNP +SLVKR V
Sbjct: 677 GTYKPNKCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRSV 730
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,692,135
Number of Sequences: 1393205
Number of extensions: 9332731
Number of successful extensions: 18900
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 18575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18890
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
