Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005256A_C01 KMC005256A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P13089|AX28_SOYBN AUXIN-INDUCED PROTEIN AUX28 gi|81759|pir||A... 202 3e-51
gb|AAC36584.1| putative IAA-related protein [Pisum sativum] 162 4e-39
emb|CAC84711.1| aux/IAA protein [Populus tremula x Populus tremu... 160 1e-38
gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremul... 137 1e-31
dbj|BAA81687.1| expressed in cucumber hypocotyls [Cucumis sativus] 130 2e-29
>sp|P13089|AX28_SOYBN AUXIN-INDUCED PROTEIN AUX28 gi|81759|pir||A28993 auxin-induced
protein aux28 - soybean gi|169921|gb|AAA33945.1|
auxin-regulated protein (Aux28)
Length = 243
Score = 202 bits (514), Expect = 3e-51
Identities = 119/171 (69%), Positives = 133/171 (77%)
Frame = +1
Query: 79 GVEETELRLGLGLPGNGGTAAGTGTEGAAAEGAVMRKRGFSETESTETEETATTTVDLML 258
G EETELRLGL PGNGGT E ++RKRGFSETE+ +E+ATT VDLML
Sbjct: 2 GFEETELRLGL--PGNGGT-----------EEVLIRKRGFSETETGHEDESATT-VDLML 47
Query: 259 NLSPKEASSASAAAGGADPRDKLKTSSPKENTLLVSDSAKPPPAKAQVVGWPPVRSFRKN 438
NLS KEA++ +AAA ADP DK KT PKE TLL +D AKPP AK QVVGWPPVRSFRKN
Sbjct: 48 NLSSKEAATTAAAA--ADPTDKHKTL-PKEKTLLPADPAKPP-AKTQVVGWPPVRSFRKN 103
Query: 439 MFAAQKSSGDQESEKNSSPNASFVKVSMDGAPYLRKVDLSMYKTYKDLSDA 591
M A QKS G+ ESEKNSSPNASFVKVSMDGAPYLRKVDL MYK+Y++LSD+
Sbjct: 104 MLAVQKSVGE-ESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDS 153
>gb|AAC36584.1| putative IAA-related protein [Pisum sativum]
Length = 167
Score = 162 bits (409), Expect = 4e-39
Identities = 92/142 (64%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
Frame = +1
Query: 178 VMRKRGFSETESTETEETATTTVDLMLNLSPKEASSASAAAGGADPRDKLKTSSPKENTL 357
V+ KRGFSETES E+ TTVDL LNLSPKE G ADP+ K PKE +L
Sbjct: 2 VVSKRGFSETESESESESEITTVDLKLNLSPKE--------GAADPQLK-----PKEKSL 48
Query: 358 LVSDSAKPPPAKAQVVGWPPVRSFRKNMFAAQKS-SGDQESEKNSSPNA---SFVKVSMD 525
LVSDS PPAKAQVVGWPPVRSFRKNMFA QKS G +E+ K SS + SFVKVSMD
Sbjct: 49 LVSDSGTKPPAKAQVVGWPPVRSFRKNMFAGQKSIGGSEETTKKSSDGSNAISFVKVSMD 108
Query: 526 GAPYLRKVDLSMYKTYKDLSDA 591
GAPYLRK+DL MYK+Y +LSDA
Sbjct: 109 GAPYLRKIDLKMYKSYPELSDA 130
>emb|CAC84711.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 229
Score = 160 bits (404), Expect = 1e-38
Identities = 104/170 (61%), Positives = 111/170 (65%), Gaps = 1/170 (0%)
Frame = +1
Query: 85 EETELRLGLGLPGNGGTAAGTGTEGAAAEGAVMRKRGFSETESTETEETATTTVDLMLNL 264
EETELRLGL PGNGG GTEG G RKRGFSET VDL LNL
Sbjct: 12 EETELRLGL--PGNGGG----GTEG----GEFARKRGFSET------------VDLKLNL 49
Query: 265 SPKEASSASAAAGGADPRDKLKTSSPKENTLLVSDSAKPPPAKAQVVGWPPVRSFRKNMF 444
S KE GG DP + + +E LL +D AKPP AKAQVVGWPPVRSFRKNM
Sbjct: 50 SSKE--------GGIDPNHE---KTRREKNLLATDPAKPP-AKAQVVGWPPVRSFRKNML 97
Query: 445 AAQKSSGDQES-EKNSSPNASFVKVSMDGAPYLRKVDLSMYKTYKDLSDA 591
A QKSS DQES K NA+FVKVSMDGAPYLRKVDL+MYKTY +LSDA
Sbjct: 98 AVQKSSTDQESTNKVPGGNATFVKVSMDGAPYLRKVDLNMYKTYHELSDA 147
>gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]
Length = 249
Score = 137 bits (345), Expect = 1e-31
Identities = 90/174 (51%), Positives = 108/174 (61%), Gaps = 5/174 (2%)
Frame = +1
Query: 85 EETELRLGLGLPGNGGTAAGTGTEGAAAEGAVMRKRGFSETESTETEETATTTVDLMLNL 264
EETELRLGL GG + G +E A + G KRGFSET VDL LNL
Sbjct: 19 EETELRLGLP----GGVSNGNDSEAAKSNG----KRGFSET------------VDLKLNL 58
Query: 265 SPKEASSASAAAGGADPRD---KLKTSSPKENTLLVSDSAKPPPAKAQVVGWPPVRSFRK 435
S KE G+D K KT +P+ N D AKPP +KAQVVGWPP+RSFRK
Sbjct: 59 STKETGK-----DGSDQEKVVMKEKTVAPRPN-----DPAKPP-SKAQVVGWPPIRSFRK 107
Query: 436 NMFAAQKSSGDQESEKNSS--PNASFVKVSMDGAPYLRKVDLSMYKTYKDLSDA 591
N+ A QK+S D+ + +SS A+FVKVSMDGAPYLRKVDL +YK+Y++LSDA
Sbjct: 108 NVMAVQKNSNDEGEKASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDA 161
>dbj|BAA81687.1| expressed in cucumber hypocotyls [Cucumis sativus]
Length = 230
Score = 130 bits (326), Expect = 2e-29
Identities = 90/173 (52%), Positives = 100/173 (57%), Gaps = 2/173 (1%)
Frame = +1
Query: 79 GVEETELRLGLGLPGNGGTAAGTGTEGAAAEGAVMRKRGFSETESTETEETATTTVDLML 258
G EETELRLGL PGN + E AA RKRGF+ET S+ET + VDL L
Sbjct: 7 GFEETELRLGL--PGNNNIGSSELGEVAA------RKRGFAETVSSET----ISKVDLKL 54
Query: 259 NLSPKEASSASAAAGGADPRDKLKTSSP--KENTLLVSDSAKPPPAKAQVVGWPPVRSFR 432
NLS KE G D + S+P K+ +L +D AKPP AKAQVVGWPPVRSFR
Sbjct: 55 NLSSKETV-------GVGDDDLVADSNPSNKDKAVLTADPAKPP-AKAQVVGWPPVRSFR 106
Query: 433 KNMFAAQKSSGDQESEKNSSPNASFVKVSMDGAPYLRKVDLSMYKTYKDLSDA 591
KN A FVKVSMDGAPYLRKVDL MYK+YK LSDA
Sbjct: 107 KNNMLA------------------FVKVSMDGAPYLRKVDLKMYKSYKQLSDA 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.304 0.123 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,538,009
Number of Sequences: 1393205
Number of extensions: 11983432
Number of successful extensions: 55176
Number of sequences better than 10.0: 671
Number of HSP's better than 10.0 without gapping: 42344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52712
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
